WormBase Tree Display for Gene: WBGene00011235
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| WBGene00011235 | SMap | S_parent | Sequence | R11A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | suro-1 | Paper_evidence | WBPaper00037824 | |||||
| Person_evidence | WBPerson1855 | ||||||||
| Sequence_name | R11A5.7 | ||||||||
| Molecular_name | R11A5.7 | ||||||||
| R11A5.7.1 | |||||||||
| CE32478 | |||||||||
| Other_name | CELE_R11A5.7 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | suro-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Dec 2010 15:49:41 | WBPerson2970 | Name_change | CGC_name | suro-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | suro | ||||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00008521 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00021213 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021645 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020283 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020281 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012168 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013895 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Located in collagen and cuticulin-based cuticle extracellular matrix and cytoplasm. Expressed in hypodermis. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Is an ortholog of human CPA6 (carboxypeptidase A6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060752 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17245) | ||||
| DOID:0111308 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17245) | ||||||
| Molecular_info | Corresponding_CDS | R11A5.7 | |||||||
| Corresponding_CDS_history | R11A5.7:wp90 | ||||||||
| Corresponding_transcript | R11A5.7.1 | ||||||||
| Other_sequence | Dviv_isotig23964 | ||||||||
| JI470815.1 | |||||||||
| Dviv_isotig29716 | |||||||||
| JI168226.1 | |||||||||
| Associated_feature | WBsf649350 | ||||||||
| WBsf664490 | |||||||||
| WBsf717527 | |||||||||
| WBsf984299 | |||||||||
| WBsf1010157 | |||||||||
| WBsf219832 | |||||||||
| WBsf219833 | |||||||||
| WBsf219834 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034851 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026090 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051762 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113528 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004081 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9163 | ||||||||
| Expr9164 | |||||||||
| Expr9165 | |||||||||
| Expr1011156 | |||||||||
| Expr1034932 | |||||||||
| Expr1155426 | |||||||||
| Expr2017139 | |||||||||
| Expr2035275 | |||||||||
| Drives_construct | WBCnstr00013759 | ||||||||
| WBCnstr00013760 | |||||||||
| WBCnstr00013761 | |||||||||
| WBCnstr00030821 | |||||||||
| Construct_product | WBCnstr00013760 | ||||||||
| WBCnstr00013761 | |||||||||
| WBCnstr00030821 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (255) | |||||||||
| Interaction (175) | |||||||||
| Map_info | Map | I | Position | 2.38441 | Error | 0.000942 | |||
| Positive | Positive_clone | R11A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037824 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059520 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
