WormBase Tree Display for Gene: WBGene00021645
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WBGene00021645 | SMap | S_parent | Sequence | Y47G6A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | Y47G6A.19 | |||||||
Molecular_name (13) | |||||||||
Other_name | CELE_Y47G6A.19 | Accession_evidence | NDB | BX284601 | |||||
Public_name | Y47G6A.19 | ||||||||
DB_info | Database | AceView | gene | 1E92 | |||||
WormQTL | gene | WBGene00021645 | |||||||
WormFlux | gene | WBGene00021645 | |||||||
NDB | locus_tag | CELE_Y47G6A.19 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021645|UniProtKB=H2L0D7 | |||||||
family | PTHR11705 | ||||||||
NCBI | gene | 171921 | |||||||
RefSeq | protein | NM_001373809.3 | |||||||
NM_001129067.5 | |||||||||
NM_001026591.6 | |||||||||
NM_001404266.1 | |||||||||
TrEMBL | UniProtAcc | Q6AW09 | |||||||
H2L0D8 | |||||||||
H2L0D7 | |||||||||
A0A7R9SW65 | |||||||||
UniProt_GCRP | UniProtAcc | A0A7R9SW65 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (136) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00023013 | ||||||||
00023014 | |||||||||
00023015 | |||||||||
00023016 | |||||||||
00023017 | |||||||||
00023018 | |||||||||
00125927 | |||||||||
00125928 | |||||||||
00125929 | |||||||||
Ortholog (26) | |||||||||
Paralog | WBGene00008521 | Caenorhabditis elegans | From_analysis (2) | ||||||
WBGene00011235 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00012168 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00013895 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00020281 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00020283 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00021213 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00021984 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00004747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | Y47G6A.19 encodes, by alternative splicing, two isoforms of a putativemetallocarboxypeptidase orthologous to human carboxypeptidase A and Bprecursors (CPA1-6 and CPB1-2); the larger Y47G6A.19 isoform contains aC-terminal metridin-like ShK toxin domain absent from the smaller one;Y47G6A.19 and its human orthologs, along with other proteins, comprisean M14A peptidase family; Y47G6A.19 is downregulated 2.5-fold indaf-2(c) dauer larvae; however, Y47G6A.19 has no obvious function innondauer animals, since Y47G6A.19(RNAi) hermaphrodites are superficiallynormal. | Paper_evidence | WBPaper00013412 | |||||
WBPaper00024393 | |||||||||
WBPaper00029056 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 22 May 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable metallocarboxypeptidase activity and zinc ion binding activity. Predicted to be involved in proteolysis. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y47G6A.19a | |||||||
Y47G6A.19b | |||||||||
Y47G6A.19c | |||||||||
Y47G6A.19d | |||||||||
Corresponding_CDS_history | Y47G6A.19:wp127 | ||||||||
Y47G6A.19a:wp238 | |||||||||
Y47G6A.19b:wp238 | |||||||||
Corresponding_transcript | Y47G6A.19a.1 | ||||||||
Y47G6A.19a.2 | |||||||||
Y47G6A.19b.1 | |||||||||
Y47G6A.19c.1 | |||||||||
Y47G6A.19d.1 | |||||||||
Other_sequence (22) | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result | WBRNAi00037186 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089198 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004631 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062986 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070012 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056809 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070049 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013167 | ||||||||
Expr1160262 | |||||||||
Expr2007625 | |||||||||
Expr2025863 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (188) | |||||||||
Interaction | WBInteraction000007789 | ||||||||
WBInteraction000123330 | |||||||||
WBInteraction000123901 | |||||||||
WBInteraction000123904 | |||||||||
WBInteraction000123927 | |||||||||
WBInteraction000123932 | |||||||||
Map_info | Positive | Positive_clone | Y47G6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | I | -3.19444 | |||||||
Reference | WBPaper00029211 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055848 | |||||||||
Method | Gene |