WormBase Tree Display for Gene: WBGene00021629

WBGene00021629 SMap: S_parent: Sequence: Y47D9A
  Identity: Version: 2
    Name: CGC_name: scpl-3 Person_evidence: WBPerson56
      Sequence_name: Y47D9A.2
      Molecular_name: Y47D9A.2a
        Y47D9A.2a.1
        CE22072
        Y47D9A.2b
        CE51841
        Y47D9A.2b.1
      Other_name: CELE_Y47D9A.2 Accession_evidence: NDB BX284601
      Public_name: scpl-3
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Feb 2007 10:20:45 WBPerson2970 Name_change: CGC_name: scpl-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scpl
    Allele: WBVar00631492
      WBVar00631493
      WBVar00631494
      WBVar00631495
      WBVar00631496
      WBVar02039588
      WBVar00631497
      WBVar00152943
      WBVar02039589
      WBVar00631498
      WBVar00152944
      WBVar00631499
      WBVar00631500
      WBVar00152945
      WBVar00631501
      WBVar00631502
      WBVar00631503
      WBVar00631504
      WBVar00631505
      WBVar00631506
      WBVar00631507
      WBVar00631508
      WBVar00631509
      WBVar00631510
      WBVar00631511
      WBVar00631512
      WBVar00631513
      WBVar00631514
      WBVar00631515
      WBVar00631516
      WBVar00631517
      WBVar01499919
      WBVar00631518
      WBVar00631519
      WBVar00631520
      WBVar01993127
      WBVar00631521
      WBVar00631522
      WBVar00631523
      WBVar00043506
      WBVar00631524
      WBVar00631525
      WBVar02124146
      WBVar01822885
      WBVar01281800
      WBVar01281801
      WBVar01281802
      WBVar01281803
      WBVar01281804
      WBVar02127117
      WBVar01281805
      WBVar02127118
      WBVar01281808
      WBVar01281810
      WBVar01281811
      WBVar01281812
      WBVar01499786
      WBVar01640886
      WBVar01640887
      WBVar01499985
      WBVar01398931
      WBVar00098652
      WBVar00098653
      WBVar00098654
      WBVar01932321
      WBVar01307027
      WBVar00332209
      WBVar00332210
      WBVar01475378
      WBVar00332211
      WBVar00332212
      WBVar00332213
      WBVar00332214
      WBVar00332215
      WBVar00332216
      WBVar00332217
      WBVar00233553
      WBVar01411510
      WBVar01498959
    RNASeq_FPKM (74)
    GO_annotation: 00094955
      00094956
      00094957
      00125913
    Ortholog (32)
    Paralog: WBGene00007054 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011897 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018474 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: scpl-3 encodes two phosphatase isoforms that are members of the CTDSPL2 subfamily of protein phosphatases that has orthologs in most eukaryotes with the notable exception of Drosophilid insects and most fungi; by homology to human CTDSPL2, SCPL-3 is predicted to regulate transcription via dephosphorylation of residues in the RNA polymerase II C-terminal domain, and also dephosphorylation of residues in SMAD transriptional regulators that are part of transforming growth factor (TGF)-beta and bone morphogenetic protein (BMP) signaling pathways. Paper_evidence: WBPaper00029279
            WBPaper00029280
            WBPaper00046227
            WBPaper00046228
          Person_evidence: WBPerson4023
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 04 Jan 2015 00:00:00
      Automated_description: Predicted to enable phosphoprotein phosphatase activity. Is an ortholog of human CTDSPL2 (CTD small phosphatase like 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y47D9A.2a
      Y47D9A.2b
    Corresponding_CDS_history: Y47D9A.2b:wp253
    Corresponding_transcript: Y47D9A.2a.1
      Y47D9A.2b.1
    Other_sequence (55)
    Associated_feature: WBsf643202
      WBsf643203
      WBsf643204
      WBsf643205
      WBsf643206
      WBsf656192
      WBsf217516
      WBsf217517
  Experimental_info: RNAi_result: WBRNAi00116596 Inferred_automatically: RNAi_primary
      WBRNAi00004625 Inferred_automatically: RNAi_primary
      WBRNAi00056792 Inferred_automatically: RNAi_primary
      WBRNAi00037178 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020015
      Expr1039461
      Expr1160249
      Expr2015648
      Expr2033880
    Microarray_results (24)
    Expression_cluster (145)
    Interaction: WBInteraction000546028
  Map_info: Map: I Position: -1.50485 Error: 0.002279
    Positive: Positive_clone: Y47D9A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030887
    WBPaper00031595
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene