WormBase Tree Display for Gene: WBGene00021629
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| WBGene00021629 | SMap | S_parent | Sequence | Y47D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scpl-3 | Person_evidence | WBPerson56 | |||||
| Sequence_name | Y47D9A.2 | ||||||||
| Molecular_name | Y47D9A.2a | ||||||||
| Y47D9A.2a.1 | |||||||||
| CE22072 | |||||||||
| Y47D9A.2b | |||||||||
| CE51841 | |||||||||
| Y47D9A.2b.1 | |||||||||
| Other_name | CELE_Y47D9A.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | scpl-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | scpl-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scpl | ||||||||
| Allele (79) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094955 | ||||||||
| 00094956 | |||||||||
| 00094957 | |||||||||
| 00125913 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00007054 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00011897 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018474 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | scpl-3 encodes two phosphatase isoforms that are members of the CTDSPL2 subfamily of protein phosphatases that has orthologs in most eukaryotes with the notable exception of Drosophilid insects and most fungi; by homology to human CTDSPL2, SCPL-3 is predicted to regulate transcription via dephosphorylation of residues in the RNA polymerase II C-terminal domain, and also dephosphorylation of residues in SMAD transriptional regulators that are part of transforming growth factor (TGF)-beta and bone morphogenetic protein (BMP) signaling pathways. | Paper_evidence | WBPaper00029279 | |||||
| WBPaper00029280 | |||||||||
| WBPaper00046227 | |||||||||
| WBPaper00046228 | |||||||||
| Person_evidence | WBPerson4023 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 Jan 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphoprotein phosphatase activity. Is an ortholog of human CTDSPL2 (CTD small phosphatase like 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y47D9A.2a | |||||||
| Y47D9A.2b | |||||||||
| Corresponding_CDS_history | Y47D9A.2b:wp253 | ||||||||
| Corresponding_transcript | Y47D9A.2a.1 | ||||||||
| Y47D9A.2b.1 | |||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf643202 | ||||||||
| WBsf643203 | |||||||||
| WBsf643204 | |||||||||
| WBsf643205 | |||||||||
| WBsf643206 | |||||||||
| WBsf656192 | |||||||||
| WBsf217516 | |||||||||
| WBsf217517 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116596 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004625 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056792 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037178 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020015 | ||||||||
| Expr1039461 | |||||||||
| Expr1160249 | |||||||||
| Expr2015648 | |||||||||
| Expr2033880 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction | WBInteraction000546028 | ||||||||
| Map_info | Map | I | Position | -1.50485 | Error | 0.002279 | |||
| Positive | Positive_clone | Y47D9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030887 | ||||||||
| WBPaper00031595 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
