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WormBase Tree Display for Gene: WBGene00020895

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Name Class

WBGene00020895SMapS_parentSequenceT28D9
IdentityVersion2
NameCGC_nameplpp-1.2Person_evidenceWBPerson580
Sequence_nameT28D9.3
Molecular_name (13)
Other_nameCELE_T28D9.3Accession_evidenceNDBBX284602
Public_nameplpp-1.2
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
231 May 2017 14:23:55WBPerson2970Name_changeCGC_nameplpp-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classplpp
Allele (43)
StrainWBStrain00031488
RNASeq_FPKM (74)
GO_annotation00005278
00005279
00055921
00055922
00055923
00055924
00055925
00125415
Ortholog (32)
ParalogWBGene00008749Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011524Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018756Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Is an ortholog of human PLPP3 (phospholipid phosphatase 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28D9.3a
T28D9.3b
T28D9.3d
Corresponding_CDS_historyT28D9.3:wp127
T28D9.3c:wp247
T28D9.3e:wp247
Corresponding_transcriptT28D9.3c
T28D9.3e
T28D9.3a.1
T28D9.3b.1
T28D9.3b.2
T28D9.3d.1
T28D9.3d.2
Other_sequenceCRC12305_1
Tcol_isotig14688
JI167794.1
CR04593
Tcir_isotig11281
Acan_isotig07031
FK804452.1
Oden_isotig20541
Dviv_isotig23813
Name_isotig01768
Associated_featureWBsf644291
WBsf644292
WBsf644293
WBsf221451
WBsf221452
Experimental_infoRNAi_resultWBRNAi00054418Inferred_automaticallyRNAi_primary
WBRNAi00070139Inferred_automaticallyRNAi_primary
WBRNAi00019401Inferred_automaticallyRNAi_primary
Expr_patternExpr1027274
Expr1039103
Expr1157962
Expr2006622
Expr2024839
Drives_constructWBCnstr00024803
Construct_productWBCnstr00024803
Microarray_results (35)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00037946:EGL-5_interacting
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00042194:Tryptophan_upregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044616:alg-3-4_downregulated_gene
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00049368:daf-2(e1370)_upregulated
WBPaper00049484:elt-2(RNAi)_downregulated_L4
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050561:indole_0.1mM-indole_upregulated
WBPaper00050561:indole_10-fold_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051039:intestine_enriched
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053599:female_vs_male_downregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053814:25C_downregulated_PY79
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00060634:unc-120(st364)_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:skpo-1(ok1640)_upregulated_OG1RF
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:F54D5.3_7003-F54D5.3_7004
WBPaper00061590:CGP37157_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064315:met-1(bn200)_downregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00065029:cadmium_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065841:1_1
WBPaper00065841:12_0
WBPaper00065841:27_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_8
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031850:mdt-15(RNAi)_downregulated
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035479:daf-16(RNAi)_downregulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_I
WBPaper00036383:ash-2_L3_regulated
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040876:mir-35_downregulated
WBPaper00040963:Q100_up
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_11d_2.0mM_Down
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041211:RPW-24_Up
WBPaper00041606:CE_S.aureus_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042178:hlh-29(tm284)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045015:acs-3(ft5)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045673:colistin_upregulated
[cgc5976]:class_1
[cgc6390]:mixed_spermatogenesis-somatic
Interaction (19)
Map_infoMapIIPosition-0.219459
PositivePositive_cloneT28D9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028527
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00065998
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene