WormBase Tree Display for Gene: WBGene00020578
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| WBGene00020578 | SMap | S_parent | Sequence | T19D12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | T19D12.3 | ||||||||
| Molecular_name | T19D12.3 | |||||||||
| Other_name | CELE_T19D12.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | T19D12.3 | |||||||||
| DB_info | Database | AceView | gene | 2G951 | ||||||
| WormQTL | gene | WBGene00020578 | ||||||||
| WormFlux | gene | WBGene00020578 | ||||||||
| NDB | locus_tag | CELE_T19D12.3 | ||||||||
| NCBI | gene | 188607 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 21 Nov 2019 15:09:06 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele | WBVar01499702 | |||||||||
| WBVar01498435 | ||||||||||
| WBVar00739479 | ||||||||||
| WBVar00739480 | ||||||||||
| WBVar00739481 | ||||||||||
| WBVar00739482 | ||||||||||
| WBVar00368640 | ||||||||||
| WBVar00368641 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00086947 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| WBGene00214436 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||||
| Paralog | WBGene00016004 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019273 | Caenorhabditis elegans | From_analysis | Panther | |||||||
| WBGene00020576 | Caenorhabditis elegans | From_analysis | Panther | |||||||
| WBGene00020577 | Caenorhabditis elegans | From_analysis | Panther | |||||||
| Structured_description | Automated_description | Enriched in CEP socket cell; GABAergic neurons; excretory cell; and intestine based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by seventeen chemicals including methylmercuric chloride; Mercuric Chloride; and Tunicamycin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T19D12.3:wp274 | ||||||||
| Corresponding_pseudogene | T19D12.3 | |||||||||
| Associated_feature | WBsf221476 | |||||||||
| Experimental_info | Expr_pattern | Expr1022815 | ||||||||
| Expr1157099 | ||||||||||
| Expr2006259 | ||||||||||
| Expr2024477 | ||||||||||
| Drives_construct | WBCnstr00025036 | |||||||||
| Construct_product | WBCnstr00025036 | |||||||||
| Microarray_results (14) | ||||||||||
| Expression_cluster (88) | ||||||||||
| Interaction | WBInteraction000190684 | |||||||||
| WBInteraction000201863 | ||||||||||
| WBInteraction000229089 | ||||||||||
| WBInteraction000276851 | ||||||||||
| WBInteraction000281918 | ||||||||||
| WBInteraction000328600 | ||||||||||
| WBInteraction000335858 | ||||||||||
| WBInteraction000353261 | ||||||||||
| WBInteraction000399967 | ||||||||||
| WBInteraction000444853 | ||||||||||
| Map_info | Positive | Positive_clone | T19D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | II | -0.0475057 | ||||||||
| Method | Gene |
