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WormBase Tree Display for Gene: WBGene00020562

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Name Class

WBGene00020562SMapS_parentSequenceT19C3
IdentityVersion1
NameSequence_nameT19C3.4
Molecular_nameT19C3.4
T19C3.4.1
CE02055
Other_nameCELE_T19C3.4Accession_evidenceNDBBX284603
Public_nameT19C3.4
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (62)
RNASeq_FPKM (74)
GO_annotation00055874
00055875
00055876
00055877
00055878
00055879
00055880
Ortholog (50)
ParalogWBGene00011401Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012180Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015518Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018930Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022452Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022127Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 5B; hereditary spastic paraplegia 31; and hereditary spastic paraplegia 72. Is an ortholog of human REEP1 (receptor accessory protein 1) and REEP4 (receptor accessory protein 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelEFO:MONDO:0015363Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
DOID:0110817Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17975)
DOID:0111205Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
DOID:0110782Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
Molecular_infoCorresponding_CDST19C3.4
Corresponding_transcriptT19C3.4.1
Other_sequence (27)
Associated_featureWBsf717855
WBsf717856
WBsf991105
WBsf1014098
WBsf226114
Experimental_infoRNAi_resultWBRNAi00035656Inferred_automaticallyRNAi_primary
WBRNAi00053507Inferred_automaticallyRNAi_primary
WBRNAi00006621Inferred_automaticallyRNAi_primary
Expr_patternExpr1027058
Expr1038963
Expr1157074
Expr2006247
Expr2024465
Drives_constructWBCnstr00025049
Construct_productWBCnstr00025049
Microarray_results (18)
Expression_clusterWBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Oogenic
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056619:CEPsh_enriched
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:CEPsh
WBPaper00061340:ILsh_OLLsh_OLQsh
WBPaper00061527:sol-1-jnk-1_18695
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F2
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065158:AFD_depleted
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4386_cluster_5_4
cgc4489_group_25
WBPaper00025141:N2_Expressed_Genes
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00035227:heat_shock_regulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036123:Cadmium_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
InteractionWBInteraction000151374
WBInteraction000264448
WBInteraction000267730
WBInteraction000356250
WBInteraction000385891
WBInteraction000581171
Map_infoPositivePositive_cloneT19C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-26.5073
ReferenceWBPaper00038491
WBPaper00055090
MethodGene