WormBase Tree Display for Gene: WBGene00020295
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| WBGene00020295 | SMap | S_parent | Sequence | T07A9 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | pqbp-1.2 | Paper_evidence | WBPaper00032449 | ||||||
| Sequence_name | T07A9.1 | |||||||||
| Molecular_name | T07A9.1 | |||||||||
| Other_name | CELE_T07A9.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pqbp-1.2 | |||||||||
| DB_info | Database | AceView | gene | 4B136 | ||||||
| WormQTL | gene | WBGene00020295 | ||||||||
| WormFlux | gene | WBGene00020295 | ||||||||
| NDB | locus_tag | CELE_T07A9.1 | ||||||||
| NCBI | gene | 188208 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 12 Jan 2009 13:35:00 | WBPerson2970 | Name_change | CGC_name | pqbp-1.2 | |||||
| 3 | 21 Sep 2017 14:00:34 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | pqbp | |||||||||
| Allele (33) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Contained_in_operon | CEOP4016 | |||||||||
| Ortholog | WBGene00143791 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00064607 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00134857 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Paralog | WBGene00012230 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020647 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||||
| Panther | ||||||||||
| Structured_description | Concise_description | pqbp-1.2 encodes a protein that is related to human PQBP1 (polyglutamine bindingprotein 1, mutations in which cause X-linked mental retardation (OMIM:300463)), but which lacks the WW domain (WWD) which has been shown to interact with RNA polymerase II and NpwBP; a mutation in pqbp-1.2, tm3045, is viable and displays no defects in lipid metabolism. | Paper_evidence | WBPaper00032449 | ||||||
| Curator_confirmed | WBPerson1843 | |||||||||
| Date_last_updated | 12 Jan 2009 00:00:00 | |||||||||
| Automated_description | Expressed in intestine. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T07A9.1:wp261 | ||||||||
| T07A9.1a:wp261 | ||||||||||
| Corresponding_transcript_history | T07A9.1b:wp261 | |||||||||
| Corresponding_pseudogene | T07A9.1 | |||||||||
| Other_sequence | PPC16406_1 | |||||||||
| GRC03897_1 | ||||||||||
| GR19062 | ||||||||||
| GR19061 | ||||||||||
| Experimental_info | Expr_pattern | Expr8601 | ||||||||
| Expr1017106 | ||||||||||
| Expr1038840 | ||||||||||
| Expr1156306 | ||||||||||
| Expr2015028 | ||||||||||
| Expr2033263 | ||||||||||
| Drives_construct | WBCnstr00013394 | |||||||||
| Microarray_results | SMD_T07A9.1 | |||||||||
| 183853_at | ||||||||||
| A_12_P106330 | ||||||||||
| Aff_T07A9.1 | ||||||||||
| GPL14144_T07A9.1_508-567_0.943_1_A | ||||||||||
| GPL8304_CE_WBGene00020295_A | ||||||||||
| GPL8673_T07A9_1P00420 | ||||||||||
| cea2.i.64202 | ||||||||||
| Expression_cluster (88) | ||||||||||
| Interaction (12) | ||||||||||
| Map_info | Map | IV | Position | -26.2749 | Error | 0.01194 | ||||
| Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00032449 | |||||||||
| WBPaper00038491 | ||||||||||
| WBPaper00055090 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
