WormBase Tree Display for Gene: WBGene00020295

WBGene00020295 SMap: S_parent: Sequence: T07A9
  Identity: Version: 3
    Name: CGC_name: pqbp-1.2 Paper_evidence: WBPaper00032449
      Sequence_name: T07A9.1
      Molecular_name: T07A9.1
      Other_name: CELE_T07A9.1 Accession_evidence: NDB BX284604
      Public_name: pqbp-1.2
    DB_info: Database: AceView gene 4B136
        WormQTL gene WBGene00020295
        WormFlux gene WBGene00020295
        NDB locus_tag CELE_T07A9.1
        NCBI gene 188208
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Jan 2009 13:35:00 WBPerson2970 Name_change: CGC_name: pqbp-1.2
        3 21 Sep 2017 14:00:34 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: pqbp
    Allele (33)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4016
    Ortholog: WBGene00143791 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00064607 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00134857 Caenorhabditis japonica From_analysis: TreeFam
    Paralog: WBGene00012230 Caenorhabditis elegans From_analysis: Panther
      WBGene00020647 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
    Structured_description: Concise_description: pqbp-1.2 encodes a protein that is related to human PQBP1 (polyglutamine bindingprotein 1, mutations in which cause X-linked mental retardation (OMIM:300463)), but which lacks the WW domain (WWD) which has been shown to interact with RNA polymerase II and NpwBP; a mutation in pqbp-1.2, tm3045, is viable and displays no defects in lipid metabolism. Paper_evidence: WBPaper00032449
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Jan 2009 00:00:00
      Automated_description: Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T07A9.1:wp261
      T07A9.1a:wp261
    Corresponding_transcript_history: T07A9.1b:wp261
    Corresponding_pseudogene: T07A9.1
    Other_sequence: PPC16406_1
      GRC03897_1
      GR19062
      GR19061
  Experimental_info: Expr_pattern: Expr8601
      Expr1017106
      Expr1038840
      Expr1156306
      Expr2015028
      Expr2033263
    Drives_construct: WBCnstr00013394
    Microarray_results: SMD_T07A9.1
      183853_at
      A_12_P106330
      Aff_T07A9.1
      GPL14144_T07A9.1_508-567_0.943_1_A
      GPL8304_CE_WBGene00020295_A
      GPL8673_T07A9_1P00420
      cea2.i.64202
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053154:human-amyloid-beta_tau_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061081:E.faecalis_downregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:RIH
      WBPaper00061340:URA_parent
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_4
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036286:Pattern_B
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc6390]:oogenesis-enriched
    Interaction (12)
  Map_info: Map: IV Position: -26.2749 Error: 0.01194
    Positive: Positive_clone: T07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032449
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene