WormBase Tree Display for Gene: WBGene00020295
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WBGene00020295 | SMap | S_parent | Sequence | T07A9 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0000336 | |||||
Gene_class | pqbp | ||||||
Allele (33) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP4016 | ||||||
Ortholog | WBGene00143791 | Caenorhabditis brenneri | From_analysis | TreeFam | |||
WBGene00064607 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00134857 | Caenorhabditis japonica | From_analysis | TreeFam | ||||
Paralog | WBGene00012230 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00020647 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
Structured_description | Concise_description | pqbp-1.2 encodes a protein that is related to human PQBP1 (polyglutamine bindingprotein 1, mutations in which cause X-linked mental retardation (OMIM:300463)), but which lacks the WW domain (WWD) which has been shown to interact with RNA polymerase II and NpwBP; a mutation in pqbp-1.2, tm3045, is viable and displays no defects in lipid metabolism. | Paper_evidence | WBPaper00032449 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Jan 2009 00:00:00 | ||||||
Automated_description | Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS_history | T07A9.1:wp261 | |||||
T07A9.1a:wp261 | |||||||
Corresponding_transcript_history | T07A9.1b:wp261 | ||||||
Corresponding_pseudogene | T07A9.1 | ||||||
Other_sequence | PPC16406_1 | ||||||
GRC03897_1 | |||||||
GR19062 | |||||||
GR19061 | |||||||
Experimental_info | Expr_pattern | Expr8601 | |||||
Expr1017106 | |||||||
Expr1038840 | |||||||
Expr1156306 | |||||||
Expr2015028 | |||||||
Expr2033263 | |||||||
Drives_construct | WBCnstr00013394 | ||||||
Microarray_results | SMD_T07A9.1 | ||||||
183853_at | |||||||
A_12_P106330 | |||||||
Aff_T07A9.1 | |||||||
GPL14144_T07A9.1_508-567_0.943_1_A | |||||||
GPL8304_CE_WBGene00020295_A | |||||||
GPL8673_T07A9_1P00420 | |||||||
cea2.i.64202 | |||||||
Expression_cluster (88) | |||||||
Interaction (12) | |||||||
Map_info | Map | IV | Position | -26.2749 | Error | 0.01194 | |
Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032449 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |