WormBase Tree Display for Gene: WBGene00020135
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| WBGene00020135 | SMap | S_parent | Sequence | T01B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aakg-4 | Person_evidence | WBPerson11446 | |||||
| Sequence_name | T01B6.3 | ||||||||
| Molecular_name | T01B6.3a | ||||||||
| T01B6.3a.1 | |||||||||
| CE33820 | |||||||||
| T01B6.3b | |||||||||
| CE33821 | |||||||||
| T01B6.3b.1 | |||||||||
| Other_name | CELE_T01B6.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | aakg-4 | ||||||||
| DB_info | Database | AceView | gene | XC930 | |||||
| WormQTL | gene | WBGene00020135 | |||||||
| WormFlux | gene | WBGene00020135 | |||||||
| NDB | locus_tag | CELE_T01B6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020135|UniProtKB=H2L0K0 | |||||||
| family | PTHR13780 | ||||||||
| NCBI | gene | 187928 | |||||||
| RefSeq | protein | NM_171633.7 | |||||||
| NM_171632.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF313247 | |||||||
| TrEMBL | UniProtAcc | H2L0K0 | |||||||
| Q8MPT4 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0K0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jul 2010 16:38:16 | WBPerson2970 | Name_change | CGC_name | aakg-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aakg | ||||||||
| Allele | WBVar01619370 | ||||||||
| WBVar00075996 | |||||||||
| WBVar01619371 | |||||||||
| WBVar01619372 | |||||||||
| WBVar00075997 | |||||||||
| WBVar00075998 | |||||||||
| WBVar00065945 | |||||||||
| WBVar02151807 | |||||||||
| WBVar02151808 | |||||||||
| WBVar01491989 | |||||||||
| WBVar01987339 | |||||||||
| WBVar01987340 | |||||||||
| WBVar01417332 | |||||||||
| WBVar00600898 | |||||||||
| WBVar01125863 | |||||||||
| WBVar01125864 | |||||||||
| WBVar01125865 | |||||||||
| WBVar01125866 | |||||||||
| WBVar01125867 | |||||||||
| WBVar01125868 | |||||||||
| WBVar01125869 | |||||||||
| WBVar01125870 | |||||||||
| WBVar01125871 | |||||||||
| WBVar01125872 | |||||||||
| WBVar01125873 | |||||||||
| WBVar01125874 | |||||||||
| WBVar01125875 | |||||||||
| WBVar01125876 | |||||||||
| WBVar00317339 | |||||||||
| WBVar01125877 | |||||||||
| WBVar01125878 | |||||||||
| WBVar00597557 | |||||||||
| WBVar01125879 | |||||||||
| WBVar01125880 | |||||||||
| WBVar01125881 | |||||||||
| WBVar01125882 | |||||||||
| WBVar01125883 | |||||||||
| WBVar01125884 | |||||||||
| WBVar01125885 | |||||||||
| WBVar01125886 | |||||||||
| WBVar01125887 | |||||||||
| WBVar01125888 | |||||||||
| WBVar01125889 | |||||||||
| WBVar01125890 | |||||||||
| WBVar01125891 | |||||||||
| WBVar01125892 | |||||||||
| WBVar01125893 | |||||||||
| WBVar01125894 | |||||||||
| WBVar01125895 | |||||||||
| WBVar01125896 | |||||||||
| WBVar01125897 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01125898 | |||||||||
| WBVar01125899 | |||||||||
| WBVar01125900 | |||||||||
| WBVar01125901 | |||||||||
| WBVar01125902 | |||||||||
| WBVar01125903 | |||||||||
| WBVar01601034 | |||||||||
| WBVar00496513 | |||||||||
| WBVar00496514 | |||||||||
| WBVar00496515 | |||||||||
| WBVar00496516 | |||||||||
| WBVar01979687 | |||||||||
| WBVar00303696 | |||||||||
| WBVar01757674 | |||||||||
| WBVar01757675 | |||||||||
| WBVar01467889 | |||||||||
| WBVar01467890 | |||||||||
| WBVar01467891 | |||||||||
| WBVar01467892 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023136 | ||||||||
| 00023137 | |||||||||
| 00023138 | |||||||||
| 00023139 | |||||||||
| 00023140 | |||||||||
| 00023141 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00011276 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013732 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021527 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020633 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | aakg-4 encodes one of five C. elegans AMP kinase (AMPK) gamma regulatory subunits. | Paper_evidence | WBPaper00031352 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in monoatomic ion transport. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nucleotide-activated protein kinase complex. Expressed in several structures, including accessory cell; dorsal nerve cord; neurons; non-striated muscle; and preanal ganglion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T01B6.3a | |||||||
| T01B6.3b | |||||||||
| Corresponding_CDS_history | T01B6.3a:wp98 | ||||||||
| T01B6.3b:wp98 | |||||||||
| Corresponding_transcript | T01B6.3a.1 | ||||||||
| T01B6.3b.1 | |||||||||
| Other_sequence | Dviv_isotig26865 | ||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052079 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017937 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11586 | ||||||||
| Expr1012719 | |||||||||
| Expr1155710 | |||||||||
| Expr2009059 | |||||||||
| Expr2027295 | |||||||||
| Drives_construct | WBCnstr00018960 | ||||||||
| WBCnstr00025352 | |||||||||
| Construct_product | WBCnstr00025352 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (194) | |||||||||
| Interaction (74) | |||||||||
| Map_info | Map | X | Position | -15.733 | Error | 0.0468 | |||
| Positive | Positive_clone | T01B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00044832 | ||||||||
| WBPaper00064229 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
