WormBase Tree Display for Variation: WBVar00600898

WBVar00600898 Name: Public_name: tm5539
    Other_name: T01B6.3b.1:c.-182_223del
      T01B6.3a.1:c.970-197_1177del
    HGVSg: CHROMOSOME_X:g.2315632_2316036del
  Sequence_details: SMap: S_parent: Sequence: T01B6
    Flanking_sequences: aaacagtgtaactagaccgtccatatacca tatttatatttgcagtttgttcatcttcgc
    Mapping_target: T01B6
    Source_location: 7 CHROMOSOME_X 2315631 2316037 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5539_external
      tm5539_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5539
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00020135
    Transcript: T01B6.3a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T01B6.3a.1:c.970-197_1177del
        cDNA_position: ?-1182
        CDS_position: ?-1177
        Protein_position: ?-393
        Intron_number: 10/12
        Exon_number: 11/13
      T01B6.3b.1 VEP_consequence: start_lost,5_prime_UTR_variant
        VEP_impact: HIGH
        HGVSc: T01B6.3b.1:c.-182_223del
        cDNA_position: 274-678
        CDS_position: ?-223
        Protein_position: ?-75
        Exon_number: 1-2/4
    Interactor: WBInteraction000578888
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 6616/6617-7021/7022 (405 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele