WormBase Tree Display for Gene: WBGene00019279

WBGene00019279 SMap: S_parent: Sequence: K01A2
  Identity: Version: 1
    Name: Sequence_name: K01A2.4
      Molecular_name: K01A2.4a
        K01A2.4a.1
        CE39022
        K01A2.4b
        CE50827
        K01A2.4a.2
        K01A2.4b.1
      Other_name: CELE_K01A2.4 Accession_evidence: NDB BX284602
      Public_name: K01A2.4
    DB_info: Database: AceView gene 2A599
        WormFlux gene WBGene00019279
        NDB locus_tag CELE_K01A2.4
        NCBI gene 3565272
        RefSeq protein NM_001381311.1
            NM_001381310.1
        TrEMBL UniProtAcc A0A0K3ARM0
            Q7KNR1
        UniProt_GCRP UniProtAcc Q7KNR1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (153)
    RNASeq_FPKM (74)
    GO_annotation: 00000831
    Ortholog: WBGene00064702 Caenorhabditis remanei From_analysis: TreeFam
      CSP26.g5613 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18316 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17509 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g880 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g24381 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      chrII_pilon.g3086 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00019278
      WBGene00019282 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00019283 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00086561 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01A2.4a
      K01A2.4b
    Corresponding_CDS_history: K01A2.4:wp147
    Corresponding_transcript: K01A2.4a.1
      K01A2.4a.2
      K01A2.4b.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00049588 Inferred_automatically: RNAi_primary
      WBRNAi00033805 Inferred_automatically: RNAi_primary
      WBRNAi00016369 Inferred_automatically: RNAi_primary
      WBRNAi00016370 Inferred_automatically: RNAi_primary
      WBRNAi00016374 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1038332
      Expr1153317
      Expr2004633
      Expr2022860
    Drives_construct: WBCnstr00025949
    Construct_product: WBCnstr00025949
    Microarray_results (25)
    Expression_cluster: WBPaper00036738:500uM_Heme_downregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044246:pgrn-1_ced-1_downregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048988:neuron_expressed
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049732:blmp-1(tm548);daf-7(e1372ts)_vs_daf-7(e1372ts)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059253:sucrose_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00061007:M.braciatum_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061106:endu-2(tm4977)_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:DB
      WBPaper00061340:DD
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061340:hmc_and_homolog
      WBPaper00061340:I5
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:PVR
      WBPaper00061340:P_cell
      WBPaper00061340:RIC_parent
      WBPaper00061340:RID
      WBPaper00061340:RID_parent
      WBPaper00061340:RMED
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062156:jmjd-1.2(zr1010)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065823:pmk-1(km25)_upregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065841:1_0
      WBPaper00065841:1_2
      WBPaper00065841:4_0
      WBPaper00065841:7_0
      WBPaper00065841:23_0
      WBPaper00065841:38_0
      WBPaper00065841:38_2
      WBPaper00065841:38_3
      WBPaper00065841:51_0
      WBPaper00065841:51_1
      WBPaper00065841:110_0
      WBPaper00065841:110_1
      WBPaper00065877:rege-1(imm070)_upregulated_OP50
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066204:CdCl2_downregulated_mRNA
      cgc4489_group_7
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025032:cluster_44
      WBPaper00025032:cluster_129
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00031003:hlh_1_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031703:heme_responsive_8
      WBPaper00032948:StarveUp2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00037147:heatshock_upregulated
      WBPaper00037695:CC_3-day
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041876:daf-10(m79)_downreglated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042067:Cu2+_upregulated_WT
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045865:biofilm_downregulated_B
      WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00046639:tyrosol_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00057098:SiO2-nanoparticles_upregulated
  Map_info: Positive: Positive_clone: K01A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -15.6297
  Method: Gene