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WormBase Tree Display for Gene: WBGene00019108

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Name Class

WBGene00019108SMapS_parentSequenceF59D6
IdentityVersion2
NameCGC_namechpf-2Person_evidenceWBPerson2233
Sequence_nameF59D6.7
Molecular_nameF59D6.7a
F59D6.7a.1
CE45471
F59D6.7b
Other_nameCELE_F59D6.7Accession_evidenceNDBBX284605
Public_namechpf-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
214 Apr 2015 09:52:28WBPerson2970Name_changeCGC_namechpf-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchpf
Allele (40)
StrainWBStrain00032856
RNASeq_FPKM (74)
GO_annotation (12)
OrthologWBGene00027419Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00143570Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00122218Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00063691Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00108268Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00227826Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g730Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9347Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12099Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4527Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18078Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1053Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10651Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2618Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28012Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23005Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00410.g10474Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g20790Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00295.g8874Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15456Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_020421Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04603Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3592Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4313Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50031500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g13627Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241019Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244018Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00111670Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276075Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257362Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00258965Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297186Trichuris murisFrom_analysisWormBase-Compara
WBGene00302309Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0037358Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-4086Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-5810Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:17433Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:24927Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1927185Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1917511Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620447Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:727796Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00003941Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00014109Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00000554Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009260Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020192Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity. Predicted to be located in plasma membrane. Expressed in ray and in male. Human ortholog(s) of this gene implicated in spastic ataxia. Is an ortholog of human CHP1 (calcineurin like EF-hand protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050952Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17433)
Molecular_infoCorresponding_CDSF59D6.7a
Corresponding_CDS_historyF59D6.7:wp220
Corresponding_transcriptF59D6.7b
F59D6.7a.1
Other_sequenceEX547409.1
PPC09890_1
SC00980
GR979084.1
Tcir_isotig07859
Acan_isotig17513
Associated_featureWBsf652522
WBsf668647
WBsf233455
Experimental_infoRNAi_resultWBRNAi00016100Inferred_automaticallyRNAi_primary
WBRNAi00080519Inferred_automaticallyRNAi_primary
WBRNAi00049180Inferred_automaticallyRNAi_primary
Expr_patternExpr12598
Expr1024518
Expr1038248
Expr1152926
Expr2009998
Expr2028239
Drives_constructWBCnstr00022364
WBCnstr00026059
Construct_productWBCnstr00026059
Microarray_results (16)
Expression_cluster (141)
InteractionWBInteraction000117439
WBInteraction000117442
WBInteraction000165373
WBInteraction000209483
Map_infoMapVPosition-12.7957
PositivePositive_cloneF59D6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00035228
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene