WormBase Tree Display for Gene: WBGene00027419

WBGene00027419 SMap: S_parent: Sequence: cb25.fpc0090
  Identity: Version: 2
    Name: CGC_name: Cbr-chpf-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04814
      Molecular_name: CBG04814
        CBG04814.1
        CBP06834
      Other_name: CBG_04814 Accession_evidence: NDB HE601135
      Public_name: Cbr-chpf-2
    DB_info: Database: NDB locus_tag CBG_04814
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 14 Apr 2015 11:01:47 WBPerson2970 Name_change: CGC_name: Cbr-chpf-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: chpf
    RNASeq_FPKM: WBls:0000002 2.30753 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        3.35087 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        3.4624 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.72881 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        3.46856 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        3.49337 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.58626 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.148455 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.296909 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.094162 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.173903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.417409 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        11.0543 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.20398 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        4.8919 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        10.5125 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        6.29705 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        6.85824 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 5.12439 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.636172 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        12.4314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        5.5393 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        7.11453 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        7.69526 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        9.85123 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 2.16679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.45868 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        2.49601 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.53333 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        3.04668 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.02792 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        17.7221 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        3.78063 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        6.088 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        6.61917 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 1.6258 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.04319 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.41937 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        2.71013 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.46065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        2.10823 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.4264 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        2.43344 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 2.71013 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.25422 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.62173 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.32684 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00130961
    Ortholog (33)
    Paralog: WBGene00026552 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031108 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031352 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032986 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041586 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042903 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans chpf-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG04814
    Corresponding_CDS_history: CBG04814:bp194
    Corresponding_transcript: CBG04814.1
    Other_sequence (28)
  Experimental_info: Expr_pattern: Expr1057158
    Microarray_results: GPL8303_CB6_WBGene00027419_A
      GPL14143_CBG04814_437-496_0.949_2_A
  Method: Gene