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WormBase Tree Display for Gene: WBGene00018474

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Name Class

WBGene00018474SMapS_parentSequenceF45E12
IdentityVersion3
NameCGC_namecnep-1Person_evidenceWBPerson1816
WBPerson56
Sequence_nameF45E12.1
Molecular_nameF45E12.1a
F45E12.1a.1
CE02737
F45E12.1b
CE46930
F45E12.1a.2
F45E12.1b.1
Other_namescpl-2Person_evidenceWBPerson56
CELE_F45E12.1Accession_evidenceNDBBX284602
Public_namecnep-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
202 Feb 2007 10:20:45WBPerson2970Name_changeCGC_namescpl-2
322 Jan 2013 16:23:13WBPerson2970Name_changeCGC_namecnep-1
Other_namescpl-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcnep
Allele (43)
StrainWBStrain00001252
RNASeq_FPKM (74)
GO_annotation (24)
OrthologWBGene00033948Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
WormBase-Compara
WBGene00054317Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00139441Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00110566Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00224369Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7178Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7022Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6957Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12191Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9268Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14686Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6998Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19491Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9971Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8344Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00367.g9846Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cnep-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold526.g3073Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00152.g5761Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09463Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006475Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02662Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5024Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20257800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4992Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247090Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262945Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288155Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001046Saccharomyces cerevisiaeFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0029067Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041114-177Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041114-152Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:19085Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1914431Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310172Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00007054Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011897Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021629Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptioncnep-1 encodes a putative serine/threonine phosphatase, orthologous to budding yeast Nem1p and human DULLARD; CNEP-1 is expressed in pharynx and intestine; CNEP-1 is distantly similar to FCP-1 and SCPL-1, -3, and -4; by homology, CNEP-1 is predicted to reside in the endoplasmic reticulum membrane in a complex with SPO-7 that functions to dephosphorylate the phosphatidic acid phosphatase LPIN-1 and thus regulate phospholipid metabolism; loss of cnep-1 activity via RNAi results in a twinned nuclei phenotype in which the embryonic blastomeres AB and P1 contain two nuclei; the twinned nuclei phenotype is also seen in embryos lacking spo-7 and lpin-1 activity.Paper_evidenceWBPaper00006525
WBPaper00029272
WBPaper00029273
WBPaper00029274
WBPaper00040466
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated23 Mar 2014 00:00:00
Automated_descriptionPredicted to enable protein serine/threonine phosphatase activity. Involved in nuclear membrane reassembly and regulation of nuclear division. Located in nuclear envelope. Is an ortholog of human CTDNEP1 (CTD nuclear envelope phosphatase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF45E12.1a
F45E12.1b
Corresponding_transcriptF45E12.1a.1
F45E12.1a.2
F45E12.1b.1
Other_sequence (26)
Associated_featureWBsf644372
WBsf657815
WBsf657816
WBsf988397
WBsf221586
WBsf221587
Experimental_infoRNAi_resultWBRNAi00047393Inferred_automaticallyRNAi_primary
WBRNAi00111105Inferred_automaticallyRNAi_primary
WBRNAi00061811Inferred_automaticallyRNAi_primary
WBRNAi00047396Inferred_automaticallyRNAi_primary
WBRNAi00047398Inferred_automaticallyRNAi_primary
WBRNAi00015019Inferred_automaticallyRNAi_primary
WBRNAi00022362Inferred_automaticallyRNAi_primary
WBRNAi00032298Inferred_automaticallyRNAi_primary
Expr_patternExpr6077
Expr11677
Expr1027913
Expr1037962
Expr1151241
Expr2010271
Expr2028513
Drives_constructWBCnstr00002146
WBCnstr00019173
WBCnstr00019174
WBCnstr00037831
Construct_productWBCnstr00019173
WBCnstr00019174
WBCnstr00037831
Microarray_results (22)
Expression_cluster (72)
Interaction (22)
Map_infoMapIIPosition0.501491Error6.6e-05
PositivePositive_cloneF45E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029277
WBPaper00031595
WBPaper00038491
WBPaper00040466
WBPaper00042949
WBPaper00045023
WBPaper00049236
WBPaper00055090
WBPaper00059563
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene