WormBase Tree Display for Gene: WBGene00018283
expand all nodes | collapse all nodes | view schema
| WBGene00018283 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sulp-3 | Person_evidence | WBPerson2233 | |||||
| Sequence_name | F41D9.5 | ||||||||
| Molecular_name | F41D9.5 | ||||||||
| F41D9.5.1 | |||||||||
| CE38957 | |||||||||
| Other_name | CELE_F41D9.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sulp-3 | ||||||||
| DB_info | Database | AceView | gene | XJ22 | |||||
| WormQTL | gene | WBGene00018283 | |||||||
| WormFlux | gene | WBGene00018283 | |||||||
| NDB | locus_tag | CELE_F41D9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018283|UniProtKB=Q94225 | |||||||
| family | PTHR11814 | ||||||||
| NCBI | gene | 181094 | |||||||
| RefSeq | protein | NM_077023.5 | |||||||
| SwissProt | UniProtAcc | Q94225 | |||||||
| UniProt_GCRP | UniProtAcc | Q94225 | |||||||
| OMIM | gene | 604943 | |||||||
| 608480 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Jan 2005 16:30:54 | WBPerson2970 | Name_change | CGC_name | sulp-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sulp | ||||||||
| Allele (91) | |||||||||
| Strain | WBStrain00036650 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00010788 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010789 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012259 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013963 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016945 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017464 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | sulp-3 encodes one of eight C. elegans members of the sulfate permease family of anion transporters; by homology, SULP-3 is predicted to function as an anion transporter that regulates cellular pH and volume via transmembrane movement of electrolytes and fluids; a sulp-3::GFP transcriptional fusion is expressed exclusively in the pharyngeal muscles. | Paper_evidence | WBPaper00025075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Sep 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable salt transmembrane transporter activity. Predicted to be involved in inorganic anion transmembrane transport and organic anion transport. Predicted to be located in membrane. Expressed in pm3; pm4; pm5; pm6; and pm7. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 61 and spermatogenic failure 3. Is an ortholog of several human genes including SLC26A6 (solute carrier family 26 member 6); SLC26A7 (solute carrier family 26 member 7); and SLC26A9 (solute carrier family 26 member 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110513 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9359) | ||||
| DOID:0070168 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14468) | ||||||
| Molecular_info | Corresponding_CDS | F41D9.5 | |||||||
| Corresponding_CDS_history | F41D9.5:wp146 | ||||||||
| Corresponding_transcript | F41D9.5.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf670837 | ||||||||
| WBsf982212 | |||||||||
| WBsf1006134 | |||||||||
| WBsf1006135 | |||||||||
| WBsf1006136 | |||||||||
| WBsf1006137 | |||||||||
| WBsf1006138 | |||||||||
| WBsf1023404 | |||||||||
| WBsf1023405 | |||||||||
| WBsf237678 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032088 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000282 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046985 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3248 | ||||||||
| Expr1026310 | |||||||||
| Expr1150848 | |||||||||
| Expr2017114 | |||||||||
| Expr2035250 | |||||||||
| Drives_construct | WBCnstr00006120 | ||||||||
| WBCnstr00006121 | |||||||||
| WBCnstr00009026 | |||||||||
| WBCnstr00011251 | |||||||||
| WBCnstr00026638 | |||||||||
| Construct_product | WBCnstr00026638 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | X | Position | -0.128164 | Error | 0.005281 | |||
| Positive | Positive_clone | F41D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025075 | ||||||||
| WBPaper00035539 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
