WormBase Tree Display for Gene: WBGene00010788
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| WBGene00010788 | SMap | S_parent | Sequence | K12G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sulp-4 | Person_evidence | WBPerson2233 | |||||
| Sequence_name | K12G11.1 | ||||||||
| Molecular_name | K12G11.1 | ||||||||
| K12G11.1.1 | |||||||||
| CE12208 | |||||||||
| Other_name | CELE_K12G11.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sulp-4 | ||||||||
| DB_info | Database | AceView | gene | 5M359 | |||||
| WormQTL | gene | WBGene00010788 | |||||||
| WormFlux | gene | WBGene00010788 | |||||||
| NDB | locus_tag | CELE_K12G11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010788|UniProtKB=G5EEA7 | |||||||
| family | PTHR11814 | ||||||||
| NCBI | gene | 179626 | |||||||
| RefSeq | protein | NM_073588.5 | |||||||
| TrEMBL | UniProtAcc | G5EEA7 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEA7 | |||||||
| OMIM | gene | 604943 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Jan 2005 16:30:54 | WBPerson2970 | Name_change | CGC_name | sulp-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sulp | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00032322 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (58) | |||||||||
| Paralog | WBGene00013963 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012259 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016945 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017464 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010789 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | sulp-4 encodes one of eight C. elegans members of the sulfate permease family of anion transporters; by homology, SULP-4 is predicted to function as an anion transporter that regulates cellular pH and volume via transmembrane movement of electrolytes and fluids and when expressed in Xenopus oocytes, SULP-4 exhibits robust transport of sulfate and more modest transport of chloride ions and oxalate; a SULP-4::GFP fusion is expressed in the apical canaliculae of the excretory cell and also in some head neurons. | Paper_evidence | WBPaper00025075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Sep 2006 00:00:00 | ||||||||
| Automated_description | Enables chloride transmembrane transporter activity; oxalate transmembrane transporter activity; and sulfate transmembrane transporter activity. Predicted to be involved in inorganic anion transmembrane transport and organic anion transport. Located in apical plasma membrane. Expressed in excretory cell. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 61. Is an ortholog of human SLC26A5 (solute carrier family 26 member 5) and SLC26A6 (solute carrier family 26 member 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110513 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9359) | ||||
| Molecular_info | Corresponding_CDS | K12G11.1 | |||||||
| Corresponding_transcript | K12G11.1.1 | ||||||||
| Other_sequence | SC01391 | ||||||||
| JI175411.1 | |||||||||
| Dviv_isotig27911 | |||||||||
| MJ04121 | |||||||||
| FK802149.1 | |||||||||
| GR978214.1 | |||||||||
| MJC03467_1 | |||||||||
| JI181216.1 | |||||||||
| Associated_feature | WBsf718413 | ||||||||
| WBsf1001463 | |||||||||
| WBsf232561 | |||||||||
| WBsf232562 | |||||||||
| WBsf232563 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017060 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034316 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050673 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3249 | ||||||||
| Expr3256 | |||||||||
| Expr1020848 | |||||||||
| Expr1154382 | |||||||||
| Expr2017115 | |||||||||
| Expr2035251 | |||||||||
| Drives_construct | WBCnstr00011252 | ||||||||
| WBCnstr00011259 | |||||||||
| WBCnstr00031144 | |||||||||
| WBCnstr00042690 | |||||||||
| Construct_product | WBCnstr00011259 | ||||||||
| WBCnstr00031144 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | 3.48341 | Error | 0.007824 | |||
| Positive | Positive_clone | K12G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025075 | ||||||||
| WBPaper00035475 | |||||||||
| WBPaper00035539 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00054370 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
