WormBase Tree Display for Gene: WBGene00017892

WBGene00017892 SMap: S_parent: Sequence: F28B4
  Identity: Version: 1
    Name: Sequence_name: F28B4.3
      Molecular_name: F28B4.3
        F28B4.3.1
        CE07153
      Other_name: CELE_F28B4.3 Accession_evidence: NDB BX284606
      Public_name: F28B4.3
    DB_info: Database: AceView gene XD846
        WormQTL gene WBGene00017892
        WormFlux gene WBGene00017892
        NDB locus_tag CELE_F28B4.3
        Panther gene CAEEL|WormBase=WBGene00017892|UniProtKB=Q19853
          family PTHR47324
        NCBI gene 180612
        RefSeq protein NM_001380930.3
        TREEFAM TREEFAM_ID TF320379
        TrEMBL UniProtAcc Q19853
        UniProt_GCRP UniProtAcc Q19853
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (87)
    RNASeq_FPKM (74)
    Ortholog (31)
    Paralog: WBGene00007340 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012018 Caenorhabditis elegans From_analysis: Panther
      WBGene00018237 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00022858 Caenorhabditis elegans From_analysis: Panther
      WBGene00021233 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019957 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00006498 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AFD; PLM; RMED; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-three chemicals including rotenone; manganese chloride; and mianserin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; C-type lectin fold; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; C-type lectin-like/link domain superfamily; Lectin C-type domain; EGF-like domain; Phosphorylation site; MD domain; and C-type lectin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28B4.3
    Corresponding_transcript: F28B4.3.1
    Other_sequence: CR08180
      CSC00458_1
      CR05396
      CJC18212_1
      CR08402
      CRC10450_1
      Tcol_isotig10776
      FD517090.1
      CGC01494_1
    Associated_feature: WBsf653819
      WBsf1004563
      WBsf1004564
      WBsf1022590
      WBsf237160
  Experimental_info: RNAi_result: WBRNAi00098170 Inferred_automatically: RNAi_primary
      WBRNAi00045796 Inferred_automatically: RNAi_primary
      WBRNAi00014031 Inferred_automatically: RNAi_primary
      WBRNAi00031513 Inferred_automatically: RNAi_primary
      WBRNAi00002129 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017501
      Expr1037692
      Expr1149708
      Expr2003092
      Expr2021306
    Drives_construct: WBCnstr00015934
      WBCnstr00026936
    Construct_product: WBCnstr00026936
    Microarray_results (17)
    Expression_cluster (264)
    Interaction (84)
  Map_info: Positive: Positive_clone: F28B4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -10.7178
  Reference: WBPaper00031686
    WBPaper00053423
    WBPaper00061547
    WBPaper00064841
  Method: Gene