WormBase Tree Display for Gene: WBGene00018237
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| WBGene00018237 | SMap | S_parent | Sequence | F40F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | irg-7 | Person_evidence | WBPerson2281 | |||||
| Sequence_name | F40F4.6 | ||||||||
| Molecular_name | F40F4.6a | ||||||||
| F40F4.6a.1 | |||||||||
| CE47861 | |||||||||
| F40F4.6b | |||||||||
| CE51544 | |||||||||
| F40F4.6b.1 | |||||||||
| Other_name | drd-2 | Person_evidence | WBPerson10050 | ||||||
| upr-1 | Paper_evidence | WBPaper00005036 | |||||||
| CELE_F40F4.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | irg-7 | ||||||||
| DB_info | Database | AceView | gene | XD856 | |||||
| WormQTL | gene | WBGene00018237 | |||||||
| WormFlux | gene | WBGene00018237 | |||||||
| NDB | locus_tag | CELE_F40F4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018237|UniProtKB=A0A131MBU3 | |||||||
| family | PTHR47324 | ||||||||
| NCBI | gene | 180613 | |||||||
| RefSeq | protein | NM_076151.7 | |||||||
| NM_001374988.3 | |||||||||
| SwissProt | UniProtAcc | A0A131MBU3 | |||||||
| UniProt_GCRP | UniProtAcc | A0A131MBU3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Apr 2015 12:07:40 | WBPerson2970 | Name_change | CGC_name | drd-2 | ||||
| 3 | 23 Sep 2016 15:30:27 | WBPerson2970 | Event | Acquires_merge | WBGene00006855 | ||||
| Name_change | CGC_name | irg-7 | |||||||
| Other_name | drd-2 | ||||||||
| Acquires_merge | WBGene00006855 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irg | ||||||||
| Allele (123) | |||||||||
| Strain | WBStrain00034060 | ||||||||
| WBStrain00033362 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002106 | ||||||||
| 00002107 | |||||||||
| 00002108 | |||||||||
| 00002109 | |||||||||
| 00002110 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00007340 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00011182 | |||||||||
| WBGene00012018 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00014666 | |||||||||
| WBGene00017892 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00022858 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00021233 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00019957 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00006498 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable carbohydrate binding activity. Predicted to be involved in innate immune response. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F4.6a | |||||||
| F40F4.6b | |||||||||
| Corresponding_transcript | F40F4.6a.1 | ||||||||
| F40F4.6b.1 | |||||||||
| Other_sequence | CBC00314_1 | ||||||||
| EX910110.1 | |||||||||
| HBC00153_1 | |||||||||
| CGC01004_1 | |||||||||
| CJC01118_1 | |||||||||
| CRC00640_1 | |||||||||
| CJC02416_1 | |||||||||
| CBC10277_1 | |||||||||
| Associated_feature | WBsf670308 | ||||||||
| WBsf237161 | |||||||||
| WBsf237162 | |||||||||
| WBsf237163 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032034 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00068256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014660 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025454 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067931 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000618 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046869 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13277 | ||||||||
| Expr1017223 | |||||||||
| Expr1037853 | |||||||||
| Expr1150735 | |||||||||
| Expr2012822 | |||||||||
| Expr2031060 | |||||||||
| Drives_construct | WBCnstr00026675 | ||||||||
| Construct_product | WBCnstr00026675 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (246) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | X | Position | -10.703 | |||||
| Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005036 | ||||||||
| WBPaper00031686 | |||||||||
| WBPaper00042060 | |||||||||
| WBPaper00044557 | |||||||||
| WBPaper00047450 | |||||||||
| WBPaper00050776 | |||||||||
| WBPaper00053423 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00061984 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
