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WormBase Tree Display for Gene: WBGene00017199

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Name Class

WBGene00017199SMapS_parentSequenceF07C4
IdentityVersion2
NameCGC_nameclec-45Person_evidenceWBPerson655
Sequence_nameF07C4.2
Molecular_nameF07C4.2
F07C4.2.1
CE09201
Other_nameCELE_F07C4.2Accession_evidenceNDBBX284605
Public_nameclec-45
DB_infoDatabaseAceViewgene5I117
WormQTLgeneWBGene00017199
WormFluxgeneWBGene00017199
NDBlocus_tagCELE_F07C4.2
PanthergeneCAEEL|WormBase=WBGene00017199|UniProtKB=P91214
familyPTHR22802
NCBIgene184130
RefSeqproteinNM_072576.2
TrEMBLUniProtAccP91214
UniProt_GCRPUniProtAccP91214
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Apr 2005 13:53:46WBPerson2970Name_changeCGC_nameclec-45
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (46)
RNASeq_FPKM (74)
GO_annotation (2)
Ortholog (29)
Paralog (71)
Structured_descriptionAutomated_descriptionPredicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF07C4.2
Corresponding_transcriptF07C4.2.1
Experimental_infoRNAi_resultWBRNAi00043889Inferred_automaticallyRNAi_primary
WBRNAi00030601Inferred_automaticallyRNAi_primary
WBRNAi00012814Inferred_automaticallyRNAi_primary
Expr_patternExpr1025975
Expr1147864
Expr2010178
Expr2028420
Drives_constructWBCnstr00027488
Construct_productWBCnstr00027488
Microarray_results (15)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00033065:isp-1-1(qm150)_upregulated
WBPaper00033070:Rhine_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00036738:4uM_Heme_upregulated
WBPaper00037950:bodywall-muscle_embryo_enriched
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:intestine_larva_enriched
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00041163:hly(+)-V-cholerae_induced
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044316:HgCl2_20uM_upregulated
WBPaper00045390:tunicamycin_upregulated
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00049498:npr-1(ur89)_regulated_1
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050096:P.aeruginosa_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050370:mys-1(RNAi)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050801:SET-4_dauer_regulome
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053020:sid-3(ok973)_upregulated
WBPaper00053020:sta-1(ok587)_upregulated
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00053909:N2_vs_CB4856_upregulated
WBPaper00054192:cold-shock_upregulated
WBPaper00054479:L.fermentum_upregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055137:S.maltophilia_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055944:C.butyricum_vs_OP50_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_downregulated
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00058948:PA14_downregulated
WBPaper00059253:sucrose_stearic-acid_downregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:172183_at-176110_at
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(ok186)_upregulated
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062491:sma-3(wk30)_upregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064473:ets-4(rrr16)_upregulated
WBPaper00064494:postdauer_upregulated_WholeAnimal
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064762:freezing-thaw_regulated
WBPaper00065029:cadmium_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065288:mdt-15(tm2182)_downregulated
WBPaper00065392:Lb.delbrueckii_upregulated
WBPaper00065392:Lb.gasseri_upregulated
WBPaper00065392:Lb.plantarum_upregulated
WBPaper00065392:Lb.reuteri_upregulated
WBPaper00065392:Lb.rhamnosus_upregulated
WBPaper00065392:P.pentosaceus_upregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00066004:tdp-1(csb38)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_upregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_14
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031703:heme_responsive_2
WBPaper00036286:Pattern_C
WBPaper00037113:CPF_DZN_16C_up-regulated
WBPaper00037113:Diazinon_16C_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_24h
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00042574:JU1580_OrsayVirus_upregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045865:biofilm_downregulated_B
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00048989:N2_allantoin_upregulated
InteractionWBInteraction000163294
WBInteraction000376140
WBInteraction000409087
WBInteraction000452272
Map_infoMapVPosition0.823199Error0.000288
PositivePositive_cloneF07C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031686
WBPaper00039120
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene