WormBase Tree Display for Expression_cluster: WBPaper00053020:sid-3(ok973)_upregulated
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| WBPaper00053020:sid-3(ok973)_upregulated | Description | Transcripts that showed significantly increased expression in sid-3(ok973) comparing to in N2 at 4 days post L4 adult hermaphrodite stage. | |
|---|---|---|---|
| Species | Caenorhabditis elegans | ||
| Algorithm | RNA-seq data were aligned to the C. elegans transcriptome WS190 using bowtie2. Counts were obtained from resulting BAM files using BEDTools, and these were used to generate normalized data tables using DESeq. A cutoff of mean 25 normalized reads (normalized according to DESeq negative binomial distribution) for at least one condition was used, and significantly altered genes were selected (DESeq Benjamini-Hochberg multiple-test correction q < 0.1). | ||
| Reference | WBPaper00053020 | ||
| Based_on_WB_Release | 190 | ||
| Gene (418) | |||
| Attribute_of | RNASeq | ||
| Regulation | Regulated_by_gene | WBGene00002207 | |
| Associated_with | Life_stage | WBls:0000067 |
