WormBase Tree Display for Gene: WBGene00002207
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| WBGene00002207 | SMap | S_parent | Sequence | B0302 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sid-3 | Paper_evidence | WBPaper00041467 | |||||
| Sequence_name | B0302.1 | ||||||||
| Molecular_name | B0302.1a | ||||||||
| B0302.1a.1 | |||||||||
| CE33506 | |||||||||
| B0302.1b | |||||||||
| CE33548 | |||||||||
| B0302.1b.1 | |||||||||
| B0302.1c | |||||||||
| Other_name | kin-25 | ||||||||
| CELE_B0302.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | sid-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 07 Nov 2012 16:57:03 | WBPerson2970 | Event | Acquires_merge | WBGene00004797 | ||||
| Name_change | CGC_name | sid-3 | |||||||
| Other_name | kin-25 | ||||||||
| Acquires_merge | WBGene00004797 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sid | ||||||||
| Allele (122) | |||||||||
| Strain | WBStrain00036067 | ||||||||
| WBStrain00055665 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (45) | |||||||||
| Paralog (44) | |||||||||
| Structured_description | Concise_description | sid-3 encodes a nonreceptor tyrosine kinase that is a member of the activated cdc-42-associated kinase (Ack) subfamily of cytoplasmic tyrosine kinases; in C. elegans sid-3 functions to regulate the import of dsRNA into cells, thus affecting the efficiency of RNA-mediated gene silencing (RNAi); SID-3 localizes to the cytoplasm. | Paper_evidence | WBPaper00004273 | |||||
| WBPaper00041467 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 02 Nov 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Located in cytoplasm. Expressed in several structures, including excretory canal; intestine; phasmid neurons; rectal gland cell; and somatic cell. Is an ortholog of human TNK2 (tyrosine kinase non receptor 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0302.1a | |||||||
| B0302.1b | |||||||||
| Corresponding_CDS_history | B0302.1a:wp95 | ||||||||
| B0302.1b:wp95 | |||||||||
| B0302.1c:wp252 | |||||||||
| Corresponding_transcript | B0302.1c | ||||||||
| B0302.1a.1 | |||||||||
| B0302.1b.1 | |||||||||
| Other_sequence | Dviv_isotig25152 | ||||||||
| HBC15010_1 | |||||||||
| Oden_isotig27081 | |||||||||
| ES739658.1 | |||||||||
| Oden_isotig22740 | |||||||||
| JI164636.1 | |||||||||
| FG619935.1 | |||||||||
| CJC00290_1 | |||||||||
| Associated_feature | WBsf648870 | ||||||||
| WBsf1008825 | |||||||||
| WBsf1008826 | |||||||||
| WBsf1008827 | |||||||||
| WBsf1024967 | |||||||||
| WBsf1024968 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00038890 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112177 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038889 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10570 | ||||||||
| Expr11321 | |||||||||
| Expr13515 | |||||||||
| Expr15069 | |||||||||
| Expr1017822 | |||||||||
| Expr1031291 | |||||||||
| Expr1143076 | |||||||||
| Expr2015816 | |||||||||
| Expr2034049 | |||||||||
| Drives_construct | WBCnstr00015763 | ||||||||
| WBCnstr00018771 | |||||||||
| WBCnstr00018848 | |||||||||
| WBCnstr00018849 | |||||||||
| WBCnstr00037960 | |||||||||
| Construct_product | WBCnstr00018848 | ||||||||
| WBCnstr00018849 | |||||||||
| WBCnstr00037960 | |||||||||
| WBCnstr00039659 | |||||||||
| WBCnstr00041965 | |||||||||
| Regulate_expr_cluster | WBPaper00053020:sid-3(ok973)_downregulated | ||||||||
| WBPaper00053020:sid-3(ok973)_upregulated | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | X | Position | 24.0852 | Error | 0.001211 | |||
| Positive | Positive_clone | B0302 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4685 | |||||||
| 5259 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (29) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
