WormBase Tree Display for Gene: WBGene00016867

WBGene00016867 SMap: S_parent: Sequence: C52B9
  Identity: Version: 1
    Name: Sequence_name: C52B9.4
      Molecular_name: C52B9.4
        C52B9.4.1
        CE30262
      Other_name: CELE_C52B9.4 Accession_evidence: NDB BX284606
      Public_name: C52B9.4
    DB_info: Database: AceView gene XE881
        WormQTL gene WBGene00016867
        WormFlux gene WBGene00016867
        NDB locus_tag CELE_C52B9.4
        Panther gene CAEEL|WormBase=WBGene00016867|UniProtKB=Q22938
          family PTHR21229
        NCBI gene 180699
        RefSeq protein NM_076328.9
        TREEFAM TREEFAM_ID TF314452
        TrEMBL UniProtAcc Q22938
        UniProt_GCRP UniProtAcc Q22938
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (53)
    RNASeq_FPKM (74)
    GO_annotation: 00076759
      00076760
      00076761
      00076762
      00076763
      00076764
      00122386
    Ortholog (38)
    Paralog: WBGene00015801 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in Golgi apparatus and membrane. Is an ortholog of human TMEM87B (transmembrane protein 87B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C52B9.4
    Corresponding_transcript: C52B9.4.1
    Other_sequence (28)
    Associated_feature: WBsf648003
      WBsf1004892
      WBsf235559
      WBsf235560
      WBsf235561
  Experimental_info: RNAi_result: WBRNAi00012295 Inferred_automatically: RNAi_primary
      WBRNAi00043014 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026206
      Expr1037237
      Expr1146978
      Expr2001860
      Expr2020086
    Drives_construct: WBCnstr00027740
    Construct_product: WBCnstr00027740
    Microarray_results (20)
    Expression_cluster: WBPaper00032976:non_compensated_genes
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00061527:uggt-1_21889-tag-320_20312
      WBPaper00062590:Aging_upregulated_body-wall-muscle
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065158:AFD_depleted
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000202536
      WBInteraction000306624
      WBInteraction000309815
      WBInteraction000351546
      WBInteraction000396986
      WBInteraction000402863
      WBInteraction000468765
      WBInteraction000470597
      WBInteraction000580981
  Map_info: Positive: Positive_clone: C52B9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -7.8305
  Reference: WBPaper00033545
    WBPaper00038491
    WBPaper00055090
  Method: Gene