WormBase Tree Display for Gene: WBGene00016283

WBGene00016283 SMap: S_parent: Sequence: C31B8
  Identity: Version: 2
    Name: CGC_name: zmp-3 Paper_evidence: WBPaper00036427
          Person_evidence: WBPerson345
      Sequence_name: C31B8.8
      Molecular_name: C31B8.8
        C31B8.8.1
        CE26674
      Other_name: CELE_C31B8.8 Accession_evidence: NDB BX284605
      Public_name: zmp-3
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Jan 2016 15:29:00 WBPerson2970 Name_change: CGC_name: zmp-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zmp
    Allele (172)
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog: WBGene00028727 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00061033 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153096 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130315 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00116008 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064350 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00051150 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00222755 Brugia malayi From_analysis: WormBase-Compara
      WBGene00226974 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g445 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15440 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15943 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6750 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14354 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2977 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10517 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5682 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11249 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g14404 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20073 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14138 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g14140 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00848.g14540 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g18346 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21705 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00139.g5399 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00139.g5401 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12654 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_020769 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00029 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21358 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50055700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g13586 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243145 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00257236 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0033438 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Panther
      ZFIN:ZDB-GENE-030131-9123 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      ZFIN:ZDB-GENE-031202-2 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      ZFIN:ZDB-GENE-100226-1 Danio rerio From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-030131-6152 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      ZFIN:ZDB-GENE-100603-2 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      ZFIN:ZDB-GENE-100603-3 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7155 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7173 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7175 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7156 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7158 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7159 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:7165 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
      HGNC:7167 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:14250 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      HGNC:14366 Homo sapiens From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      MGI:97005 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:97007 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:1340026 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:97009 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:97010 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:103189 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:1202395 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:97011 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:1353466 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:1933846 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:1933847 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      MGI:2153062 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      MGI:3039232 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:631408 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:620195 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:620192 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:621317 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:620196 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:1306642 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:1308730 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
      RGD:1311573 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
    Paralog: WBGene00006987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010423 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010524 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012185 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012364 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00019212 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00020646 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00194737 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enables metallopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to be located in extracellular space. Expressed in anchor cell. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); and reproductive organ cancer (multiple). Is an ortholog of several human genes including MMP1 (matrix metallopeptidase 1); MMP3 (matrix metallopeptidase 3); and MMP8 (matrix metallopeptidase 8). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (74)
  Molecular_info: Corresponding_CDS: C31B8.8
    Corresponding_transcript: C31B8.8.1
    Other_sequence (46)
    Associated_feature: WBsf652521
      WBsf233452
  Experimental_info: RNAi_result: WBRNAi00022666 Inferred_automatically: RNAi_primary
      WBRNAi00041600 Inferred_automatically: RNAi_primary
      WBRNAi00088998 Inferred_automatically: RNAi_primary
      WBRNAi00028230 Inferred_automatically: RNAi_primary
      WBRNAi00011430 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14536
      Expr1016898
      Expr1145626
      Expr2018180
      Expr2036317
    Drives_construct: WBCnstr00021181
      WBCnstr00028192
      WBCnstr00040502
    Construct_product: WBCnstr00021181
      WBCnstr00028192
      WBCnstr00040502
    Antibody: WBAntibody00002300
    Microarray_results (17)
    Expression_cluster (183)
    Interaction (12)
  Map_info: Map: V Position: -12.8562
    Positive: Positive_clone: C31B8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040289
    WBPaper00055090
    WBPaper00056095
    WBPaper00061665
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene