WormBase Tree Display for Gene: WBGene00012364
expand all nodes | collapse all nodes | view schema
| WBGene00012364 | SMap | S_parent | Sequence | W09D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zmp-4 | Paper_evidence | WBPaper00036427 | |||||
| Person_evidence | WBPerson345 | ||||||||
| Sequence_name | W09D12.1 | ||||||||
| Molecular_name | W09D12.1a | ||||||||
| W09D12.1a.1 | |||||||||
| CE33197 | |||||||||
| W09D12.1b | |||||||||
| CE52784 | |||||||||
| W09D12.1b.1 | |||||||||
| Other_name | CELE_W09D12.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | zmp-4 | ||||||||
| DB_info | Database | AceView | gene | 5P398 | |||||
| WormQTL | gene | WBGene00012364 | |||||||
| WormFlux | gene | WBGene00012364 | |||||||
| NDB | locus_tag | CELE_W09D12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012364|UniProtKB=Q23227 | |||||||
| family | PTHR10201 | ||||||||
| NCBI | gene | 179991 | |||||||
| RefSeq | protein | NM_001368476.2 | |||||||
| NM_074277.7 | |||||||||
| TrEMBL | UniProtAcc | Q23227 | |||||||
| A0A3B1E3U1 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23227 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jan 2016 15:29:00 | WBPerson2970 | Name_change | CGC_name | zmp-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zmp | ||||||||
| Allele (50) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00006987 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010423 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010524 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012185 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020646 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019212 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00194737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to be located in extracellular matrix. Expressed in body wall musculature. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); autoimmune disease (multiple); and carcinoma (multiple). Is an ortholog of human MMP2 (matrix metallopeptidase 2); MMP23B (matrix metallopeptidase 23B); and MMP9 (matrix metallopeptidase 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (122) | ||||||||
| Molecular_info | Corresponding_CDS | W09D12.1a | |||||||
| W09D12.1b | |||||||||
| Corresponding_CDS_history | W09D12.1:wp93 | ||||||||
| Corresponding_transcript | W09D12.1a.1 | ||||||||
| W09D12.1b.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf1002183 | ||||||||
| WBsf1002184 | |||||||||
| WBsf1020949 | |||||||||
| WBsf235007 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019748 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089182 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055040 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000622 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002142 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14538 | ||||||||
| Expr14539 | |||||||||
| Expr1026445 | |||||||||
| Expr1158579 | |||||||||
| Expr2018181 | |||||||||
| Expr2036318 | |||||||||
| Drives_construct | WBCnstr00029982 | ||||||||
| WBCnstr00040501 | |||||||||
| Construct_product | WBCnstr00029982 | ||||||||
| WBCnstr00040501 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (258) | |||||||||
| Map_info | Map | V | Position | 7.01111 | |||||
| Positive | Positive_clone | W09D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00056095 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
