WormBase Tree Display for Gene: WBGene00012185
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| WBGene00012185 | SMap | S_parent | Sequence | W01F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | W01F3.2 | |||||||
| Molecular_name | W01F3.2 | ||||||||
| W01F3.2.1 | |||||||||
| CE16530 | |||||||||
| Other_name | CELE_W01F3.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | W01F3.2 | ||||||||
| DB_info | Database | AceView | gene | 5V131 | |||||
| WormQTL | gene | WBGene00012185 | |||||||
| WormFlux | gene | WBGene00012185 | |||||||
| NDB | locus_tag | CELE_W01F3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012185|UniProtKB=O62390 | |||||||
| family | PTHR10201 | ||||||||
| NCBI | gene | 180351 | |||||||
| RefSeq | protein | NM_075591.6 | |||||||
| TREEFAM | TREEFAM_ID | TF344186 | |||||||
| TrEMBL | UniProtAcc | O62390 | |||||||
| UniProt_GCRP | UniProtAcc | O62390 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (53) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00006987 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010423 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010524 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016283 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020646 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019212 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012364 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00194737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in AIB; SIB; germline precursor cell; and hypodermis based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including 1-methylnicotinamide; manganese chloride; and sodium arsenite based on RNA-seq; microarray; and proteomic studies. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); autoimmune disease (multiple); and carcinoma (multiple). Human MMP9 enables identical protein binding activity; metalloendopeptidase activity; and serine-type endopeptidase activity. Is predicted to encode a protein with the following domain: Hemopexin-like domain superfamily. Is an ortholog of human MMP2 (matrix metallopeptidase 2); MMP23B (matrix metallopeptidase 23B); and MMP9 (matrix metallopeptidase 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (122) | ||||||||
| Molecular_info | Corresponding_CDS | W01F3.2 | |||||||
| Corresponding_transcript | W01F3.2.1 | ||||||||
| Other_sequence | Dviv_isotig31079 | ||||||||
| CBC02137_1 | |||||||||
| Acan_isotig12815 | |||||||||
| Tcir_isotig04024 | |||||||||
| Hbac_isotig02725 | |||||||||
| CR07048 | |||||||||
| CRC02265_1 | |||||||||
| Tcol_isotig02099 | |||||||||
| CR00258 | |||||||||
| Tcol_isotig02100 | |||||||||
| Associated_feature | WBsf647751 | ||||||||
| WBsf1003606 | |||||||||
| WBsf1003607 | |||||||||
| WBsf1021987 | |||||||||
| WBsf233211 | |||||||||
| WBsf233212 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054529 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036151 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012510 | ||||||||
| Expr1035387 | |||||||||
| Expr1158075 | |||||||||
| Expr2006671 | |||||||||
| Expr2024888 | |||||||||
| Drives_construct | WBCnstr00030077 | ||||||||
| Construct_product | WBCnstr00030077 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (287) | |||||||||
| Interaction (201) | |||||||||
| Map_info | Positive | Positive_clone | W01F3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 25.0306 | |||||||
| Method | Gene |
