WormBase Tree Display for Gene: WBGene00015865

WBGene00015865 SMap: S_parent: Sequence: C16E9
  Identity: Version: 1
    Name: Sequence_name: C16E9.1
      Molecular_name: C16E9.1
        C16E9.1.1
        CE35403
      Other_name: CELE_C16E9.1 Accession_evidence: NDB BX284606
      Public_name: C16E9.1
    DB_info: Database: AceView gene XH561
        WormQTL gene WBGene00015865
        WormFlux gene WBGene00015865
        NDB locus_tag CELE_C16E9.1
        Panther gene CAEEL|WormBase=WBGene00015865|UniProtKB=Q18048
          family PTHR24020
        NCBI gene 182693
        RefSeq protein NM_076775.6
        TREEFAM TREEFAM_ID TF330078
        TrEMBL UniProtAcc Q18048
        UniProt_GCRP UniProtAcc Q18048
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (60)
    RNASeq_FPKM (74)
    GO_annotation: 00060067
      00060068
      00060069
    Ortholog: WBGene00032177 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00051402 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142979 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134114 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153562 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00164704 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00068952 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00062115 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00222518 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3719 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4178 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21102 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15038 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2776 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20633 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9203 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10830 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7719 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10853 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00203.g6915 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C16E9.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold570.g4237 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00029.g1649 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00264 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024683 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07147 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16874 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0198000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19330 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-050307-3 Danio rerio From_analysis: Hieranoid
            OMA
      ZFIN:ZDB-GENE-050208-114 Danio rerio From_analysis: Hieranoid
            OMA
      HGNC:6907 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
      MGI:1278313 Mus musculus From_analysis: Hieranoid
            SonicParanoid
      MGI:106591 Mus musculus From_analysis: Hieranoid
            OMA
      MGI:1921449 Mus musculus From_analysis: Hieranoid
            SonicParanoid
      RGD:1359410 Rattus norvegicus From_analysis: Hieranoid
            OMA
      RGD:1564128 Rattus norvegicus From_analysis: Hieranoid
            SonicParanoid
      RGD:1308536 Rattus norvegicus From_analysis: Hieranoid
            SonicParanoid
    Paralog: WBGene00007800 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00015993 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00016048 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000853 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003482 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003497 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017965 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019570 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020579 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021343 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix. Is an ortholog of human MATN1 (matrilin 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16E9.1
    Corresponding_CDS_history: C16E9.1:wp107
    Corresponding_transcript: C16E9.1.1
    Associated_feature: WBsf1005684
      WBsf235890
      WBsf235891
  Experimental_info: RNAi_result: WBRNAi00028978 Inferred_automatically: RNAi_primary
      WBRNAi00010872 Inferred_automatically: RNAi_primary
      WBRNAi00040740 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022003
      Expr1144785
      Expr2000884
      Expr2019103
    Drives_construct: WBCnstr00028502
    Construct_product: WBCnstr00028502
    Microarray_results (19)
    Expression_cluster (224)
    Interaction: WBInteraction000137019
      WBInteraction000343151
      WBInteraction000372434
      WBInteraction000385869
      WBInteraction000394016
      WBInteraction000419988
      WBInteraction000437583
      WBInteraction000454106
  Map_info: Positive: Positive_clone: C16E9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -1.96459
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064099
  Method: Gene