WormBase Tree Display for Gene: WBGene00015789

WBGene00015789 SMap: S_parent: Sequence: C15C7
  Identity: Version: 2
    Name: CGC_name: syx-6 Person_evidence: WBPerson3132
      Sequence_name: C15C7.1
      Molecular_name: C15C7.1
        C15C7.1.1
        CE30865
      Other_name: CELE_C15C7.1 Accession_evidence: NDB BX284606
      Public_name: syx-6
    DB_info: Database: AceView gene XD783
        WormQTL gene WBGene00015789
        WormFlux gene WBGene00015789
        NDB locus_tag CELE_C15C7.1
        Panther gene CAEEL|WormBase=WBGene00015789|UniProtKB=P83528
          family PTHR12791
        NCBI gene 259698
        RefSeq protein NM_001392741.1
        SwissProt UniProtAcc P83528
        TREEFAM TREEFAM_ID TF313254
        UniProt_GCRP UniProtAcc P83528
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 16 Apr 2010 14:03:06 WBPerson2970 Name_change: CGC_name: syx-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    Allele (20)
    Strain: WBStrain00001363
      WBStrain00002195
    RNASeq_FPKM (74)
    GO_annotation: 00048848
      00048849
      00048850
      00048851
      00048852
      00048853
      00048854
      00048855
    Contained_in_operon: CEOPX040
    Ortholog (27)
    Paralog: WBGene00043064 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be involved in synaptic vesicle docking. Located in Golgi trans cisterna. Expressed in head. Is an ortholog of human STX10 (syntaxin 10). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C15C7.1
    Corresponding_transcript: C15C7.1.1
    Other_sequence (25)
    Associated_feature: WBsf034315
      WBsf662584
      WBsf1004536
      WBsf235456
  Experimental_info: RNAi_result: WBRNAi00040594 Inferred_automatically: RNAi_primary
      WBRNAi00110491 Inferred_automatically: RNAi_primary
      WBRNAi00110506 Inferred_automatically: RNAi_primary
      WBRNAi00110520 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1446
      Expr4832
      Expr5267
      Expr5268
      Expr13818
      Expr1025910
      Expr1036755
      Expr1144649
      Expr2017196
      Expr2035332
    Drives_construct: WBCnstr00002253
      WBCnstr00004271
      WBCnstr00012263
      WBCnstr00028567
    Construct_product: WBCnstr00019191
      WBCnstr00028567
      WBCnstr00040136
    Microarray_results (13)
    Expression_cluster: WBPaper00029359_1141
      WBPaper00029359_1280
      WBPaper00029359_1304
      WBPaper00029359_1444
      WBPaper00029359_1497
      WBPaper00029359_1504
      WBPaper00029359_1604
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Coelomocyte
      WBPaper00061340:FLP
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061651:Coelomocyte_enriched
      WBPaper00061651:Spermatheca_enriched
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00036286:Pattern_F
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00041606:CE_X.nematophila_regulated
    Interaction (24)
  Map_info: Map: X Position: -11.6777 Error: 0.112361
    Positive: Positive_clone: C15C7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010295
    WBPaper00018596
    WBPaper00030963
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene