WormBase Tree Display for Gene: WBGene00015061
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| WBGene00015061 | SMap | S_parent | Sequence | B0228 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | cpna-2 | Person_evidence | WBPerson56 | |||||
| Sequence_name | B0228.4 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | tag-308 | ||||||||
| CELE_B0228.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | cpna-2 | ||||||||
| DB_info | Database | AceView | gene | 2I41 | |||||
| WormQTL | gene | WBGene00015061 | |||||||
| WormFlux | gene | WBGene00015061 | |||||||
| NDB | locus_tag | CELE_B0228.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015061|UniProtKB=Q09221 | |||||||
| family | PTHR45751 | ||||||||
| NCBI | gene | 174250 | |||||||
| RefSeq | protein | NM_001026713.4 | |||||||
| NM_063224.6 | |||||||||
| NM_063222.4 | |||||||||
| NM_001047258.3 | |||||||||
| SwissProt | UniProtAcc | Q09221 | |||||||
| TREEFAM | TREEFAM_ID | TF351315 | |||||||
| UniProt_GCRP | UniProtAcc | Q09221 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-308 | ||||
| 3 | 21 Apr 2009 16:04:55 | WBPerson9133 | Name_change | CGC_name | cpna-2 | ||||
| Other_name | tag-308 | ||||||||
| 4 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00043075 | ||||
| Acquires_merge | WBGene00015060 | ||||||||
| WBGene00043075 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpna | ||||||||
| Allele (381) | |||||||||
| Strain | WBStrain00036140 | ||||||||
| WBStrain00037963 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052927 | ||||||||
| 00052928 | |||||||||
| 00052929 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00001577 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00006441 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007044 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007221 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012128 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cpna-2 encodes proteins with similarity to several InterPro domains including those of polycystin cation channels, von Willebrand factor, the DNA recombination repair protein BRCA2, protein-tyrosine phosphatase, non-receptor type-13, glyoxylate carboligase, and copines, Ca2+-dependent phosphatidylserine binding proteins; cpna-2::gfp reporter fusions are expressed in body wall muscle. | Paper_evidence | WBPaper00026677 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in nucleus. Expressed in body wall musculature; muscle cell; and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0228.4a | |||||||
| B0228.4c | |||||||||
| B0228.4d | |||||||||
| B0228.4e | |||||||||
| Corresponding_CDS_history | B0228.4b:wp130 | ||||||||
| B0228.4b:wp214 | |||||||||
| B0228.4c:wp130 | |||||||||
| Corresponding_transcript | B0228.4a.1 | ||||||||
| B0228.4c.1 | |||||||||
| B0228.4d.1 | |||||||||
| B0228.4e.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00038764 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009607 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038763 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038762 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009606 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009605 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001063 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1418 | ||||||||
| Expr89 | |||||||||
| Expr3676 | |||||||||
| Expr5023 | |||||||||
| Expr5024 | |||||||||
| Expr1024361 | |||||||||
| Expr1036435 | |||||||||
| Expr1142973 | |||||||||
| Expr2010498 | |||||||||
| Expr2028738 | |||||||||
| Drives_construct | WBCnstr00002140 | ||||||||
| WBCnstr00004234 | |||||||||
| WBCnstr00011592 | |||||||||
| Microarray_results (50) | |||||||||
| Expression_cluster (208) | |||||||||
| Interaction | WBInteraction000371459 | ||||||||
| WBInteraction000386094 | |||||||||
| WBInteraction000396907 | |||||||||
| WBInteraction000565486 | |||||||||
| WBInteraction000576746 | |||||||||
| WBInteraction000578440 | |||||||||
| WBInteraction000583916 | |||||||||
| WBInteraction000584201 | |||||||||
| Map_info | Map | II | Position | 0.55876 | Error | 0.003674 | |||
| Positive | Positive_clone | B0228 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5147 | |||||||
| 4221 | |||||||||
| 4530 | |||||||||
| 5562 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026677 | ||||||||
| WBPaper00039197 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060839 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
