WormBase Tree Display for Gene: WBGene00012128
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| WBGene00012128 | SMap | S_parent | Sequence | T28F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nra-1 | Paper_evidence | WBPaper00026635 | |||||
| Person_evidence | WBPerson2633 | ||||||||
| Sequence_name | T28F3.1 | ||||||||
| Molecular_name | T28F3.1a | ||||||||
| T28F3.1a.1 | |||||||||
| CE19806 | |||||||||
| T28F3.1b | |||||||||
| CE09683 | |||||||||
| T28F3.1b.1 | |||||||||
| Other_name | CELE_T28F3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nra-1 | ||||||||
| DB_info | Database | AceView | gene | 4S226 | |||||
| WormQTL | gene | WBGene00012128 | |||||||
| WormFlux | gene | WBGene00012128 | |||||||
| NDB | locus_tag | CELE_T28F3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012128|UniProtKB=Q9XUB9 | |||||||
| family | PTHR10857 | ||||||||
| NCBI | gene | 178508 | |||||||
| RefSeq | protein | NM_182304.4 | |||||||
| NM_070668.6 | |||||||||
| SwissProt | UniProtAcc | Q9XUB9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUB9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 Aug 2009 11:56:38 | WBPerson9133 | Name_change | CGC_name | nra-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nra | ||||||||
| Allele (140) | |||||||||
| Strain | WBStrain00031773 | ||||||||
| WBStrain00036870 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101657 | ||||||||
| 00101658 | |||||||||
| 00101659 | |||||||||
| 00101660 | |||||||||
| 00101661 | |||||||||
| 00101662 | |||||||||
| 00101663 | |||||||||
| 00101664 | |||||||||
| 00101665 | |||||||||
| 00119309 | |||||||||
| Ortholog (81) | |||||||||
| Paralog | WBGene00001577 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006441 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007044 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007221 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nra-1 encodes a putative calcium-dependent phospholipid bindingprotein of the copine family; nra-1 is required for sperm to normallymigrate towards a PUFA-based signal exuded by oocytes; nra-1(RNAi)hermaphrodites are infertile, both through aberrant loss of their ownsperm and through failure of males to effectively inseminate them. | Paper_evidence | WBPaper00028527 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 09 Sep 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium-dependent phospholipid binding activity. Involved in receptor localization to synapse. Located in plasma membrane. Expressed in body wall musculature; head neurons; tail neurons; and ventral cord neurons. Is an ortholog of human CPNE5 (copine 5) and CPNE9 (copine family member 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28F3.1a | |||||||
| T28F3.1b | |||||||||
| Corresponding_transcript | T28F3.1a.1 | ||||||||
| T28F3.1b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf652418 | ||||||||
| WBsf718262 | |||||||||
| WBsf999017 | |||||||||
| WBsf999018 | |||||||||
| WBsf999019 | |||||||||
| WBsf999020 | |||||||||
| WBsf1018976 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr3703 | ||||||||
| Expr1021053 | |||||||||
| Expr1035364 | |||||||||
| Expr1157977 | |||||||||
| Expr2014433 | |||||||||
| Expr2032674 | |||||||||
| Drives_construct | WBCnstr00006241 | ||||||||
| WBCnstr00006256 | |||||||||
| WBCnstr00011614 | |||||||||
| WBCnstr00030120 | |||||||||
| Construct_product | WBCnstr00006241 | ||||||||
| WBCnstr00006256 | |||||||||
| WBCnstr00011614 | |||||||||
| WBCnstr00030120 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (172) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | IV | Position | 16.3844 | Error | 0.013134 | |||
| Positive | Positive_clone | T28F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028527 | ||||||||
| WBPaper00035008 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038626 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060661 | |||||||||
| WBPaper00063861 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
