WormBase Tree Display for Gene: WBGene00012128
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WBGene00012128 | SMap | S_parent | Sequence | T28F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | nra-1 | Paper_evidence | WBPaper00026635 | |||
Person_evidence | WBPerson2633 | ||||||
Sequence_name | T28F3.1 | ||||||
Molecular_name | T28F3.1a | ||||||
T28F3.1a.1 | |||||||
CE19806 | |||||||
T28F3.1b | |||||||
CE09683 | |||||||
T28F3.1b.1 | |||||||
Other_name | CELE_T28F3.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | nra-1 | ||||||
DB_info | Database | AceView | gene | 4S226 | |||
WormQTL | gene | WBGene00012128 | |||||
WormFlux | gene | WBGene00012128 | |||||
NDB | locus_tag | CELE_T28F3.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012128|UniProtKB=Q9XUB9 | |||||
family | PTHR10857 | ||||||
NCBI | gene | 178508 | |||||
RefSeq | protein | NM_182304.4 | |||||
NM_070668.6 | |||||||
SwissProt | UniProtAcc | Q9XUB9 | |||||
UniProt_GCRP | UniProtAcc | Q9XUB9 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nra | ||||||
Allele (140) | |||||||
Strain | WBStrain00031773 | ||||||
WBStrain00036870 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00101657 | ||||||
00101658 | |||||||
00101659 | |||||||
00101660 | |||||||
00101661 | |||||||
00101662 | |||||||
00101663 | |||||||
00101664 | |||||||
00101665 | |||||||
00119309 | |||||||
Ortholog (81) | |||||||
Paralog | WBGene00001577 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00006441 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00007044 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00007221 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00006495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | nra-1 encodes a putative calcium-dependent phospholipid bindingprotein of the copine family; nra-1 is required for sperm to normallymigrate towards a PUFA-based signal exuded by oocytes; nra-1(RNAi)hermaphrodites are infertile, both through aberrant loss of their ownsperm and through failure of males to effectively inseminate them. | Paper_evidence | WBPaper00028527 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 09 Sep 2009 00:00:00 | ||||||
Automated_description | Predicted to enable calcium-dependent phospholipid binding activity. Involved in receptor localization to synapse. Located in plasma membrane. Expressed in body wall musculature; head neurons; tail neurons; and ventral cord neurons. Is an ortholog of human CPNE5 (copine 5) and CPNE9 (copine family member 9). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T28F3.1a | |||||
T28F3.1b | |||||||
Corresponding_transcript | T28F3.1a.1 | ||||||
T28F3.1b.1 | |||||||
Other_sequence (20) | |||||||
Associated_feature | WBsf652418 | ||||||
WBsf718262 | |||||||
WBsf999017 | |||||||
WBsf999018 | |||||||
WBsf999019 | |||||||
WBsf999020 | |||||||
WBsf1018976 | |||||||
Experimental_info | RNAi_result (12) | ||||||
Expr_pattern | Expr3703 | ||||||
Expr1021053 | |||||||
Expr1035364 | |||||||
Expr1157977 | |||||||
Expr2014433 | |||||||
Expr2032674 | |||||||
Drives_construct | WBCnstr00006241 | ||||||
WBCnstr00006256 | |||||||
WBCnstr00011614 | |||||||
WBCnstr00030120 | |||||||
Construct_product | WBCnstr00006241 | ||||||
WBCnstr00006256 | |||||||
WBCnstr00011614 | |||||||
WBCnstr00030120 | |||||||
Microarray_results (27) | |||||||
Expression_cluster (172) | |||||||
Interaction (48) | |||||||
Map_info | Map | IV | Position | 16.3844 | Error | 0.013134 | |
Positive | Positive_clone | T28F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00028527 | ||||||
WBPaper00035008 | |||||||
WBPaper00038491 | |||||||
WBPaper00038626 | |||||||
WBPaper00055090 | |||||||
WBPaper00060661 | |||||||
WBPaper00063861 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |