WormBase Tree Display for Gene: WBGene00013308
expand all nodes | collapse all nodes | view schema
| WBGene00013308 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | nuo-3 | Person_evidence | WBPerson1157 | |||||
| Sequence_name | Y57G11C.12 | ||||||||
| Molecular_name | Y57G11C.12 | ||||||||
| Y57G11C.12.1 | |||||||||
| CE14948 | |||||||||
| Y57G11C.12.2 | |||||||||
| Other_name | ndua-6 | Person_evidence | WBPerson555 | ||||||
| CELE_Y57G11C.12 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | nuo-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00013308 | |||||
| WormFlux | gene | WBGene00013308 | |||||||
| NDB | locus_tag | CELE_Y57G11C.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013308|UniProtKB=O18236 | |||||||
| family | PTHR12964 | ||||||||
| NCBI | gene | 36805062 | |||||||
| RefSeq | protein | NM_001392444.1 | |||||||
| TrEMBL | UniProtAcc | O18236 | |||||||
| UniProt_GCRP | UniProtAcc | O18236 | |||||||
| OMIM | gene | 602138 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 31 Aug 2005 14:07:05 | WBPerson2970 | Name_change | CGC_name | nuo-3 | ||||
| 3 | 06 Mar 2018 14:43:22 | WBPerson4025 | Event | Split_into | WBGene00303007 | ||||
| 4 | 16 Jan 2023 18:37:21 | WBPerson51134 | Name_change | Other_name | ndua-6 | ||||
| Split_into | WBGene00303007 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nuo | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00003089 | ||||||||
| WBStrain00055406 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031815 | ||||||||
| 00031816 | |||||||||
| 00031817 | |||||||||
| 00031818 | |||||||||
| 00031819 | |||||||||
| 00031820 | |||||||||
| 00031821 | |||||||||
| 00031822 | |||||||||
| 00031823 | |||||||||
| Contained_in_operon | CEOP5614 | ||||||||
| Ortholog (28) | |||||||||
| Structured_description | Concise_description | The nuo-3 locus encodes two distinct, non-overlapping proteins: Y57G11C.12a (homologous to human C3orf10/BRICK1, a component of the WAVE1 complex) and Y57G11C.12b (a putativeNADH-ubiquinone oxidoreductase alpha subunit, homologous to human NDUFA6 [OMIM:602138]). | Person_evidence | WBPerson242 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 12 May 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in response to oxidative stress. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in Alzheimer's disease and nuclear type mitochondrial complex I deficiency 33. Is an ortholog of human NDUFA6 (NADH:ubiquinone oxidoreductase subunit A6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112097 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7690) | ||||
| DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7690) | ||||||
| Molecular_info | Corresponding_CDS | Y57G11C.12 | |||||||
| Corresponding_CDS_history | Y57G11C.12a:wp264 | ||||||||
| Y57G11C.12b:wp264 | |||||||||
| Corresponding_transcript | Y57G11C.12.1 | ||||||||
| Y57G11C.12.2 | |||||||||
| Corresponding_transcript_history | Y57G11C.12c:wp264 | ||||||||
| Associated_feature | WBsf652383 | ||||||||
| WBsf981851 | |||||||||
| WBsf998642 | |||||||||
| WBsf231227 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Chronogram977 | ||||||||
| Expr7077 | |||||||||
| Expr1012642 | |||||||||
| Expr1035936 | |||||||||
| Expr1161096 | |||||||||
| Expr2014529 | |||||||||
| Expr2032768 | |||||||||
| Drives_construct | WBCnstr00003574 | ||||||||
| WBCnstr00029696 | |||||||||
| Construct_product | WBCnstr00029696 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | IV | Position | 12.5086 | Error | 0.002306 | |||
| Positive | Positive_clone | Y57G11C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005928 | ||||||||
| WBPaper00026715 | |||||||||
| WBPaper00031194 | |||||||||
| WBPaper00033840 | |||||||||
| WBPaper00037471 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041233 | |||||||||
| WBPaper00048636 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
