WormBase Tree Display for Gene: WBGene00012803

WBGene00012803 SMap: S_parent: Sequence: Y43F4B
  Identity: Version: 2
    Name: CGC_name: pgm-2 Person_evidence: WBPerson555
      Sequence_name: Y43F4B.5
      Molecular_name: Y43F4B.5a
        Y43F4B.5a.1
        CE16630
        Y43F4B.5b
        CE34117
        Y43F4B.5b.1
      Other_name: CELE_Y43F4B.5 Accession_evidence: NDB BX284603
      Public_name: pgm-2
    DB_info: Database: AceView gene 3O391
        WormQTL gene WBGene00012803
        WormFlux gene WBGene00012803
        NDB locus_tag CELE_Y43F4B.5
        Panther gene CAEEL|WormBase=WBGene00012803|UniProtKB=O45934
          family PTHR45745
        NCBI gene 176749
        RefSeq protein NM_001027701.5
            NM_001027702.5
        TREEFAM TREEFAM_ID TF300692
        TrEMBL UniProtAcc Q86DA0
            O45934
        UniProt_GCRP UniProtAcc O45934
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Oct 2023 01:37:05 WBPerson51134 Name_change: CGC_name: pgm-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pgm
    Allele (57)
    RNASeq_FPKM (74)
    GO_annotation (7)
    Contained_in_operon: CEOP3776
    Ortholog (50)
    Paralog: WBGene00009006 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013690 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019890 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphopentomutase activity. Predicted to be involved in purine ribonucleoside salvage. Located in nucleus. Is an ortholog of human PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2 like 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y43F4B.5a
      Y43F4B.5b
    Corresponding_transcript: Y43F4B.5a.1
      Y43F4B.5b.1
    Other_sequence (103)
    Associated_feature (14)
  Experimental_info: RNAi_result: WBRNAi00056491 Inferred_automatically: RNAi_primary
      WBRNAi00056492 Inferred_automatically: RNAi_primary
      WBRNAi00090785 Inferred_automatically: RNAi_primary
      WBRNAi00009329 Inferred_automatically: RNAi_primary
      WBRNAi00002698 Inferred_automatically: RNAi_primary
      WBRNAi00002599 Inferred_automatically: RNAi_primary
      WBRNAi00037045 Inferred_automatically: RNAi_primary
      WBRNAi00026703 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9508
      Expr1026569
      Expr1035664
      Expr1159960
      Expr2007490
      Expr2025726
    Drives_construct: WBCnstr00029831
    Construct_product: WBCnstr00014073
      WBCnstr00029831
    Microarray_results (27)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00035963:S.aureus_8h_downregulated
      WBPaper00035963:S.aureus_24h_downregulated
      WBPaper00037047:insoluble_protein
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038289:oocyte_protein
      WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059605:MUT-16_interacting
      WBPaper00060683:hlh-11(overexpression)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:PVR
      WBPaper00061340:P_cell
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:hars-1-cct-4_20449
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_depleted
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      cgc4489_group_7
      WBPaper00025032:cluster_110
      WBPaper00025032:PAL-1_target_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00036286:Pattern_G
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00041002:HQ_3d_0.2mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_15
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
    SAGE_tag (11)
    Interaction (121)
  Map_info: Positive: Positive_clone: Y43F4B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 21.2081
  Reference: WBPaper00029024
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
  Method: Gene