WormBase Tree Display for Gene: WBGene00009006
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| WBGene00009006 | SMap | S_parent | Sequence | F21D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pgm-3 | Person_evidence | WBPerson555 | |||||
| Sequence_name | F21D5.1 | ||||||||
| Molecular_name | F21D5.1 | ||||||||
| F21D5.1.1 | |||||||||
| CE03244 | |||||||||
| Other_name | CELE_F21D5.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pgm-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | pgm-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgm | ||||||||
| Allele (38) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP4300 | ||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00012803 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00013690 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019890 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | F21D5.1 encodes a putative phosphoacetylglucosamine mutase orthologousto human PGM3 (OMIM:172100); F21D5.1 is thought to catalyse the thirdstep of the hexosamine pathway to UDP-N-acetylglucosamine orUDP-N-acetylgalactosamine; F21D5.1 transcripts are enriched duringoogenesis; F21D5.1(RNAi) animals have an osmotically-sensitive embryoniclethal phenotype, presumably because of defects in chitin and eggshellsynthesis. | Paper_evidence | WBPaper00006390 | |||||
| WBPaper00025054 | |||||||||
| WBPaper00028588 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 07 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process. Human ortholog(s) of this gene implicated in cervical cancer; immunodeficiency 23; and teratoma. Is an ortholog of human PGM3 (phosphoglucomutase 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111953 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||||
| DOID:3307 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||||||
| DOID:4362 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||||||
| Molecular_info | Corresponding_CDS | F21D5.1 | |||||||
| Corresponding_transcript | F21D5.1.1 | ||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf646186 | ||||||||
| WBsf228731 | |||||||||
| WBsf228732 | |||||||||
| WBsf228733 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00008674 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025164 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031215 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024271 | ||||||||
| Expr1033921 | |||||||||
| Expr1149130 | |||||||||
| Expr2002821 | |||||||||
| Expr2021038 | |||||||||
| Drives_construct | WBCnstr00032531 | ||||||||
| Construct_product | WBCnstr00032531 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (279) | |||||||||
| Map_info | Positive | Positive_clone | F21D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 3.95739 | |||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057849 | |||||||||
| Method | Gene |
