WormBase Tree Display for Gene: WBGene00009006
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WBGene00009006 | SMap | S_parent | Sequence | F21D5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pgm-3 | Person_evidence | WBPerson555 | |||
Sequence_name | F21D5.1 | ||||||
Molecular_name | F21D5.1 | ||||||
F21D5.1.1 | |||||||
CE03244 | |||||||
Other_name | CELE_F21D5.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | pgm-3 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pgm | ||||||
Allele (38) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (14) | |||||||
Contained_in_operon | CEOP4300 | ||||||
Ortholog (46) | |||||||
Paralog | WBGene00012803 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00013690 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019890 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | F21D5.1 encodes a putative phosphoacetylglucosamine mutase orthologousto human PGM3 (OMIM:172100); F21D5.1 is thought to catalyse the thirdstep of the hexosamine pathway to UDP-N-acetylglucosamine orUDP-N-acetylgalactosamine; F21D5.1 transcripts are enriched duringoogenesis; F21D5.1(RNAi) animals have an osmotically-sensitive embryoniclethal phenotype, presumably because of defects in chitin and eggshellsynthesis. | Paper_evidence | WBPaper00006390 | |||
WBPaper00025054 | |||||||
WBPaper00028588 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 07 Apr 2007 00:00:00 | ||||||
Automated_description | Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process. Human ortholog(s) of this gene implicated in cervical cancer; immunodeficiency 23; and teratoma. Is an ortholog of human PGM3 (phosphoglucomutase 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111953 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||
DOID:3307 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||||
DOID:4362 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8907) | ||||
Molecular_info | Corresponding_CDS | F21D5.1 | |||||
Corresponding_transcript | F21D5.1.1 | ||||||
Other_sequence (40) | |||||||
Associated_feature | WBsf646186 | ||||||
WBsf228731 | |||||||
WBsf228732 | |||||||
WBsf228733 | |||||||
Experimental_info | RNAi_result | WBRNAi00008674 | Inferred_automatically | RNAi_primary | |||
WBRNAi00025164 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085828 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00045190 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031215 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1024271 | ||||||
Expr1033921 | |||||||
Expr1149130 | |||||||
Expr2002821 | |||||||
Expr2021038 | |||||||
Drives_construct | WBCnstr00032531 | ||||||
Construct_product | WBCnstr00032531 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (155) | |||||||
Interaction (279) | |||||||
Map_info | Positive | Positive_clone | F21D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Interpolated_map_position | IV | 3.95739 | |||||
Reference | WBPaper00029024 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00057849 | |||||||
Method | Gene |