WormBase Tree Display for Gene: WBGene00012715
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WBGene00012715 | SMap | S_parent | Sequence | Y39E4B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | snpc-1.2 | Person_evidence | WBPerson2290 | |||||
Sequence_name | Y39E4B.2 | ||||||||
Molecular_name | Y39E4B.2 | ||||||||
Y39E4B.2.1 | |||||||||
CE21714 | |||||||||
Other_name | CELE_Y39E4B.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | snpc-1.2 | ||||||||
DB_info | Database | AceView | gene | 3O256 | |||||
WormQTL | gene | WBGene00012715 | |||||||
WormFlux | gene | WBGene00012715 | |||||||
NDB | locus_tag | CELE_Y39E4B.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012715|UniProtKB=Q9U2K7 | |||||||
family | PTHR15131 | ||||||||
NCBI | gene | 176734 | |||||||
RefSeq | protein | NM_067318.5 | |||||||
TREEFAM | TREEFAM_ID | TF317804 | |||||||
TrEMBL | UniProtAcc | Q9U2K7 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2K7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-1.2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snpc | ||||||||
Allele (50) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00099345 | ||||||||
00099346 | |||||||||
00099347 | |||||||||
00099348 | |||||||||
Ortholog (30) | |||||||||
Paralog | WBGene00015513 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00019894 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017265 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y39E4B.2 | |||||||
Corresponding_transcript | Y39E4B.2.1 | ||||||||
Other_sequence | CBC07405_1 | ||||||||
MC00813 | |||||||||
CR01551 | |||||||||
MC01226 | |||||||||
CRC03671_1 | |||||||||
Associated_feature | WBsf651567 | ||||||||
WBsf666497 | |||||||||
WBsf667567 | |||||||||
WBsf978911 | |||||||||
WBsf994821 | |||||||||
WBsf227720 | |||||||||
WBsf227721 | |||||||||
Transcription_factor | WBTranscriptionFactor001093 | ||||||||
Experimental_info | RNAi_result | WBRNAi00056241 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056244 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113562 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036945 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1027728 | ||||||||
Expr1035625 | |||||||||
Expr1159728 | |||||||||
Expr2015957 | |||||||||
Expr2034192 | |||||||||
Drives_construct | WBCnstr00029862 | ||||||||
Construct_product | WBCnstr00029862 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (151) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | III | Position | 20.9838 | |||||
Positive | Positive_clone | Y39E4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00055090 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |