WormBase Tree Display for Gene: WBGene00012715
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| WBGene00012715 | SMap | S_parent | Sequence | Y39E4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | snpc-1.2 | Person_evidence | WBPerson2290 | |||||
| Sequence_name | Y39E4B.2 | ||||||||
| Molecular_name | Y39E4B.2 | ||||||||
| Y39E4B.2.1 | |||||||||
| CE21714 | |||||||||
| Other_name | CELE_Y39E4B.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | snpc-1.2 | ||||||||
| DB_info | Database | AceView | gene | 3O256 | |||||
| WormQTL | gene | WBGene00012715 | |||||||
| WormFlux | gene | WBGene00012715 | |||||||
| NDB | locus_tag | CELE_Y39E4B.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012715|UniProtKB=Q9U2K7 | |||||||
| family | PTHR15131 | ||||||||
| NCBI | gene | 176734 | |||||||
| RefSeq | protein | NM_067318.5 | |||||||
| TREEFAM | TREEFAM_ID | TF317804 | |||||||
| TrEMBL | UniProtAcc | Q9U2K7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U2K7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snpc | ||||||||
| Allele | WBVar01449779 | ||||||||
| WBVar00182567 | |||||||||
| WBVar00182568 | |||||||||
| WBVar00182569 | |||||||||
| WBVar01498619 | |||||||||
| WBVar01793935 | |||||||||
| WBVar01793936 | |||||||||
| WBVar01499774 | |||||||||
| WBVar01339147 | |||||||||
| WBVar00308029 | |||||||||
| WBVar01339148 | |||||||||
| WBVar01498679 | |||||||||
| WBVar01900796 | |||||||||
| WBVar00873793 | |||||||||
| WBVar00873794 | |||||||||
| WBVar00873795 | |||||||||
| WBVar00873796 | |||||||||
| WBVar00873797 | |||||||||
| WBVar00873798 | |||||||||
| WBVar00873799 | |||||||||
| WBVar00873800 | |||||||||
| WBVar00873801 | |||||||||
| WBVar00873802 | |||||||||
| WBVar00873803 | |||||||||
| WBVar00873804 | |||||||||
| WBVar00873805 | |||||||||
| WBVar00873806 | |||||||||
| WBVar00873807 | |||||||||
| WBVar00873808 | |||||||||
| WBVar00873809 | |||||||||
| WBVar00873810 | |||||||||
| WBVar00873811 | |||||||||
| WBVar00873812 | |||||||||
| WBVar00873813 | |||||||||
| WBVar01913380 | |||||||||
| WBVar00873814 | |||||||||
| WBVar00873815 | |||||||||
| WBVar01898797 | |||||||||
| WBVar00873816 | |||||||||
| WBVar00873817 | |||||||||
| WBVar00252794 | |||||||||
| WBVar00413180 | |||||||||
| WBVar00413181 | |||||||||
| WBVar00413182 | |||||||||
| WBVar00413183 | |||||||||
| WBVar00413184 | |||||||||
| WBVar00413185 | |||||||||
| WBVar00413186 | |||||||||
| WBVar01833029 | |||||||||
| WBVar01833030 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00099345 | ||||||||
| 00099346 | |||||||||
| 00099347 | |||||||||
| 00099348 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00015513 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019894 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017265 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39E4B.2 | |||||||
| Corresponding_transcript | Y39E4B.2.1 | ||||||||
| Other_sequence | CBC07405_1 | ||||||||
| MC00813 | |||||||||
| CR01551 | |||||||||
| MC01226 | |||||||||
| CRC03671_1 | |||||||||
| Associated_feature | WBsf651567 | ||||||||
| WBsf666497 | |||||||||
| WBsf667567 | |||||||||
| WBsf978911 | |||||||||
| WBsf994821 | |||||||||
| WBsf227720 | |||||||||
| WBsf227721 | |||||||||
| Transcription_factor | WBTranscriptionFactor001093 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00056241 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056244 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113562 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036945 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027728 | ||||||||
| Expr1035625 | |||||||||
| Expr1159728 | |||||||||
| Expr2015957 | |||||||||
| Expr2034192 | |||||||||
| Drives_construct | WBCnstr00029862 | ||||||||
| Construct_product | WBCnstr00029862 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | III | Position | 20.9838 | |||||
| Positive | Positive_clone | Y39E4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
