WormBase Tree Display for Gene: WBGene00012618

WBGene00012618 SMap: S_parent: Sequence: Y38H6C
  Identity: Version: 3
    Name: CGC_name: dct-10 Paper_evidence: WBPaper00031095
          Person_evidence: WBPerson1157
      Sequence_name: Y38H6C.5
      Molecular_name: Y38H6C.5
      Other_name: CELE_Y38H6C.5 Accession_evidence: NDB BX284605
      Public_name: dct-10
    DB_info: Database: AceView gene 5U981
        WormQTL gene WBGene00012618
        WormFlux gene WBGene00012618
        NDB locus_tag CELE_Y38H6C.5
        NCBI gene 189686
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Nov 2007 16:33:50 WBPerson2970 Name_change: CGC_name: dct-10
        3 13 Nov 2017 16:58:05 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: dct
    Allele (133)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00014814 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Automated_description: Enriched in neurons and retrovesicular ganglion based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including Alovudine; Sodium Chloride; and Psoralens based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: Y38H6C.5:wp194
      Y38H6C.5:wp227
      Y38H6C.5:wp262
    Corresponding_pseudogene: Y38H6C.5
    Associated_feature: WBsf662247
      WBsf1003579
      WBsf1003580
      WBsf1021974
  Experimental_info: Expr_pattern: Expr1025288
      Expr1159603
      Expr2010809
      Expr2029046
    Microarray_results: SMD_Y38H6C.5
      190665_at
      Aff_Y38H6C.5
      GPL19516_CGZ0044700
      GPL21109_Y38H6C.5
      GPL8673_Y38H6C_5P01523
      GPL8673_Y38H6C_5P02025
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049098:hrde-1(tm1200)-induced_23C
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050193:lsm-1(tm3585)_upregulated_L3
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051265:F1_hrde-1(tm1200)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00053909:N2_vs_CB4856_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
      WBPaper00057162:meg-3_meg-4_downregulated_sRNA
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059490:dcr-1(m9375)_downregulated
      WBPaper00059598:HeatShock_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060661:hypoxia_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062325:etr-1(lq61)_upregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_upregulated_N2
      WBPaper00065841:13_1
      WBPaper00065841:35_2
      WBPaper00065841:66_0
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      [cgc5976]:class_2
    Interaction: WBInteraction000345348
      WBInteraction000418107
      WBInteraction000561112
  Map_info: Map: V Position: 25.0059 Error: 0.000267
    Positive: Positive_clone: Y38H6C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031095
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene