WormBase Tree Display for Expression_cluster: WBPaper00061527:sre-33-ZK1025.1_8337
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| WBPaper00061527:sre-33-ZK1025.1_8337 | Description | Coexpression clique No. 203, sre-33-ZK1025.1_8337, on the genome-wide coexpression clique map for the nematode GPL200 platform. | |
|---|---|---|---|
| Species | Caenorhabditis elegans | ||
| Algorithm | All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. | ||
| Reference | WBPaper00061527 | ||
| Based_on_WB_Release | |||
| Gene (1099) | |||
| Attribute_of | Microarray_experiment | ||
| Associated_with | GO_term | GO:0007600 | |
| Remark | Type: Co-expression Cluster |
