WormBase Tree Display for Gene: WBGene00012587

WBGene00012587 SMap: S_parent: Sequence: Y38E10A
  Identity: Version: 1
    Name: Sequence_name: Y38E10A.9
      Molecular_name: Y38E10A.9
        Y38E10A.9.1
        CE21589
      Other_name: CELE_Y38E10A.9 Accession_evidence: NDB BX284602
      Public_name: Y38E10A.9
    DB_info: Database: AceView gene 2M901
        WormQTL gene WBGene00012587
        WormFlux gene WBGene00012587
        NDB locus_tag CELE_Y38E10A.9
        Panther gene CAEEL|WormBase=WBGene00012587|UniProtKB=Q9NAK2
          family PTHR34602
        NCBI gene 189656
        RefSeq protein NM_064291.2
        TREEFAM TREEFAM_ID TF319947
        TrEMBL UniProtAcc Q9NAK2
        UniProt_GCRP UniProtAcc Q9NAK2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (44)
    RNASeq_FPKM (74)
    Ortholog (62)
    Paralog: WBGene00012594 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012589 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012593 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00175028 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012590 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012591 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012604 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012603 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in AFDL; AFDR; GABAergic neurons; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on tiling array; RNA-seq; and microarray studies. Is affected by twelve chemicals including Tunicamycin; multi-walled carbon nanotube; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1412) and Protein of unknown function DUF1412. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38E10A.9
    Corresponding_transcript: Y38E10A.9.1
    Associated_feature: WBsf1013461
      WBsf222277
  Experimental_info: RNAi_result: WBRNAi00036850 Inferred_automatically: RNAi_primary
      WBRNAi00056030 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027539
      Expr1159553
      Expr2007309
      Expr2025542
    Microarray_results (16)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
      WBPaper00050096:P.aeruginosa_downregulated
      WBPaper00050412:cco-1(RNAi)_downregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:GABAergic-neuron_enriched
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059490:dcr-1(m9375)_upregulated
      WBPaper00059527:lsm-1_downregulated_L1
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00061340:AFD
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:F14F7.4_16243-ZK353.3
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062103:neuron_enriched
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062197:mec-8_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_17
      WBPaper00024671:AFD_vs_AWB_upregulated
      WBPaper00035892:Y.pestis_regulated
      WBPaper00037113:CPF_DZN_16C_down-regulated
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00055899:nitrotriazolone_regulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
  Map_info: Positive: Positive_clone: Y38E10A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 10.4653
  Method: Gene