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WormBase Tree Display for Gene: WBGene00012356

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Name Class

WBGene00012356SMapS_parentSequenceW09D6
IdentityVersion1
NameSequence_nameW09D6.1
Molecular_nameW09D6.1a
W09D6.1a.1
CE31855
W09D6.1b
CE31856
W09D6.1c
CE43290
W09D6.1a.2
W09D6.1b.1
W09D6.1c.1
Other_nameCELE_W09D6.1Accession_evidenceNDBBX284603
Public_nameW09D6.1
DB_infoDatabaseAceViewgene3M161
WormQTLgeneWBGene00012356
WormFluxgeneWBGene00012356
NDBlocus_tagCELE_W09D6.1
PanthergeneCAEEL|WormBase=WBGene00012356|UniProtKB=B6VQ94
familyPTHR44394
NCBIgene176537
RefSeqproteinNM_181907.4
NM_001268177.2
NM_001382995.1
TREEFAMTREEFAM_IDTF354264
TrEMBLUniProtAccB6VQ94
Q9XUJ4
Q8I104
UniProt_GCRPUniProtAccB6VQ94
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (59)
RNASeq_FPKM (74)
GO_annotation00006373
Contained_in_operonCEOP3716
Ortholog (46)
ParalogWBGene00016849Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00006351Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007969Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009221Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013440Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018269Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018488Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018579Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in amino acid activation for nonribosomal peptide biosynthetic process. Is an ortholog of human AASDH (aminoadipate-semialdehyde dehydrogenase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW09D6.1a
W09D6.1b
W09D6.1c
Corresponding_CDS_historyW09D6.1:wp85
Corresponding_transcriptW09D6.1a.1
W09D6.1a.2
W09D6.1b.1
W09D6.1c.1
Associated_featureWBsf659566
WBsf994256
WBsf994257
WBsf994258
WBsf1015920
Experimental_infoRNAi_resultWBRNAi00062406Inferred_automaticallyRNAi_primary
WBRNAi00006229Inferred_automaticallyRNAi_primary
WBRNAi00055042Inferred_automaticallyRNAi_primary
WBRNAi00019750Inferred_automaticallyRNAi_primary
WBRNAi00036405Inferred_automaticallyRNAi_primary
Expr_patternExpr1022382
Expr1035472
Expr1158582
Expr2006888
Expr2025115
Microarray_results (27)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040209:B.thuringiensis_downregulated_MY15
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_enriched
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058969:RIS_depleted
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:B
WBPaper00061340:Excretory_cell_parent
WBPaper00061340:g1A_parent
WBPaper00061340:g2_parent
WBPaper00061340:PVT
WBPaper00061340:RID_parent
WBPaper00061527:sre-33-ZK1025.1_8337
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we31)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062056:met-2(n4256)_upregulated
WBPaper00062146:MOG-7-degron_1h_regulated
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064716:paraquat_upregulated
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00034757:up_by_oxidative_stress
WBPaper00037113:CPF_16C_down-regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
[cgc6390]:intrinsic
SAGE_tagSAGE:ttattgatccgaaaacgStrandSense
Unambiguously_mapped
SAGE:atgacttcaaaaagcggStrandSense
Unambiguously_mapped
SAGE:atgacttcaaStrandSense
Unambiguously_mapped
SAGE:gcttttcacgtgggatgStrandSense
Unambiguously_mapped
SAGE:aaaagttcaaStrandAntisense
InteractionWBInteraction000195233
WBInteraction000205833
WBInteraction000228125
WBInteraction000283718
WBInteraction000355156
WBInteraction000386796
WBInteraction000386962
WBInteraction000463578
Map_infoPositivePositive_cloneW09D6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII5.88963
ReferenceWBPaper00038491
WBPaper00055090
MethodGene