WormBase Tree Display for Gene: WBGene00012330
expand all nodes | collapse all nodes | view schema
| WBGene00012330 | SMap | S_parent | Sequence | W07G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | zip-3 | Person_evidence | WBPerson1997 | |||||
| WBPerson460 | |||||||||
| Sequence_name | W07G1.3 | ||||||||
| Molecular_name | W07G1.3 | ||||||||
| W07G1.3.1 | |||||||||
| CE37052 | |||||||||
| W07G1.3.2 | |||||||||
| Other_name | CELE_W07G1.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | zip-3 | ||||||||
| DB_info | Database | AceView | gene | 2O240 | |||||
| WormQTL | gene | WBGene00012330 | |||||||
| WormFlux | gene | WBGene00012330 | |||||||
| NDB | locus_tag | CELE_W07G1.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012330|UniProtKB=Q9XUK2 | |||||||
| family | PTHR13044 | ||||||||
| NCBI | gene | 189280 | |||||||
| RefSeq | protein | NM_064518.8 | |||||||
| SwissProt | UniProtAcc | Q9XUK2 | |||||||
| TREEFAM | TREEFAM_ID | TF321841 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUK2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | zip-3 | ||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00012331 | ||||
| Acquires_merge | WBGene00012331 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zip | ||||||||
| Allele (224) | |||||||||
| Strain | WBStrain00037751 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00000221 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00007932 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00077761 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013878 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | zip-3 encodes a bZip transcription factor. | Paper_evidence | WBPaper00027309 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in mitochondrial unfolded protein response and negative regulation of innate immune response. Located in nucleus. Is an ortholog of human ATF5 (activating transcription factor 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W07G1.3 | |||||||
| Corresponding_CDS_history | W07G1.3:wp128 | ||||||||
| Corresponding_transcript | W07G1.3.1 | ||||||||
| W07G1.3.2 | |||||||||
| Other_sequence | Tcir_isotig12628 | ||||||||
| Dviv_isotig28954 | |||||||||
| Oden_isotig19788 | |||||||||
| Associated_feature | WBsf666346 | ||||||||
| WBsf666347 | |||||||||
| WBsf666348 | |||||||||
| WBsf666349 | |||||||||
| WBsf978537 | |||||||||
| WBsf981349 | |||||||||
| WBsf990563 | |||||||||
| WBsf990564 | |||||||||
| WBsf1013732 | |||||||||
| WBsf224224 | |||||||||
| Transcription_factor | WBTranscriptionFactor000224 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00054956 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054957 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14313 | ||||||||
| Expr1012953 | |||||||||
| Expr1035455 | |||||||||
| Expr1158490 | |||||||||
| Expr2018157 | |||||||||
| Expr2036294 | |||||||||
| Drives_construct | WBCnstr00029995 | ||||||||
| WBCnstr00040809 | |||||||||
| Construct_product | WBCnstr00017357 | ||||||||
| WBCnstr00029995 | |||||||||
| WBCnstr00040809 | |||||||||
| Regulate_expr_cluster | WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | II | Position | 21.5462 | Error | 0.035138 | |||
| Positive | Positive_clone | W07G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056326 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00062345 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
