WormBase Tree Display for Gene: WBGene00012330

WBGene00012330 SMap: S_parent: Sequence: W07G1
  Identity: Version: 3
    Name: CGC_name: zip-3 Person_evidence: WBPerson1997
            WBPerson460
      Sequence_name: W07G1.3
      Molecular_name: W07G1.3
        W07G1.3.1
        CE37052
        W07G1.3.2
      Other_name: CELE_W07G1.3 Accession_evidence: NDB BX284602
      Public_name: zip-3
    DB_info: Database: AceView gene 2O240
        WormQTL gene WBGene00012330
        WormFlux gene WBGene00012330
        NDB locus_tag CELE_W07G1.3
        Panther gene CAEEL|WormBase=WBGene00012330|UniProtKB=Q9XUK2
          family PTHR13044
        NCBI gene 189280
        RefSeq protein NM_064518.8
        SwissProt UniProtAcc Q9XUK2
        TREEFAM TREEFAM_ID TF321841
        UniProt_GCRP UniProtAcc Q9XUK2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Jul 2005 13:34:00 WBPerson2970 Name_change: CGC_name: zip-3
        3 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00012331
      Acquires_merge: WBGene00012331
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zip
    Allele: WBVar00011938
      WBVar00785680
      WBVar00785681
      WBVar00785682
      WBVar01547775
      WBVar01499702
      WBVar00785683
      WBVar00011943
      WBVar01547776
      WBVar01547777
      WBVar00785684
      WBVar00785685
      WBVar01495657
      WBVar01767110
      WBVar00785686
      WBVar00785687
      WBVar01767111
      WBVar01767112
      WBVar00785688
      WBVar01767113
      WBVar00785689
      WBVar01767114
      WBVar00785690
      WBVar00785691
      WBVar01767115
      WBVar00785692
      WBVar01767116
      WBVar00785693
      WBVar02123372
      WBVar01767117
      WBVar01767119
      WBVar00785694
      WBVar00785695
      WBVar00785696
      WBVar00785697
      WBVar00785698
      WBVar00785699
      WBVar01892899
      WBVar00785700
      WBVar01892902
      WBVar00785701
      WBVar01606307
      WBVar00785702
      WBVar01606308
      WBVar00785703
      WBVar01606309
      WBVar00785704
      WBVar01498435
      WBVar01606310
      WBVar01606311
      WBVar00785705
      WBVar00785706
      WBVar01606312
      WBVar00785707
      WBVar00785708
      WBVar00785709
      WBVar02095783
      WBVar00785710
      WBVar02085113
      WBVar02123575
      WBVar02085114
      WBVar02121739
      WBVar02029552
      WBVar02029553
      WBVar02029554
      WBVar02029555
      WBVar02122112
      WBVar00383990
      WBVar00383991
      WBVar00319962
      WBVar00383992
      WBVar00383993
      WBVar00235090
      WBVar00383994
      WBVar00383995
      WBVar00383996
      WBVar02087707
      WBVar00383997
      WBVar00269293
      WBVar02087708
      WBVar00383998
      WBVar00383999
      WBVar00384000
      WBVar00384001
      WBVar01495153
      WBVar00384002
      WBVar02049531
      WBVar01802077
      WBVar01802078
      WBVar02092324
      WBVar01950276
      WBVar01802079
      WBVar01950277
      WBVar00231867
      WBVar00231868
      WBVar01950278
      WBVar00231869
      WBVar00231870
      WBVar01414764
      WBVar01414765
      WBVar00231871
      WBVar00231873
      WBVar02096748
      WBVar00231874
      WBVar00231875
      WBVar02040847
      WBVar01383445
      WBVar00231876
      WBVar01383452
      WBVar00231877
      WBVar00231878
      WBVar00231879
      WBVar00231880
      WBVar01318684
      WBVar01318685
      WBVar00312854
      WBVar01318689
      WBVar00312855
      WBVar00312856
      WBVar01318691
      WBVar01318692
      WBVar00312857
      WBVar00312858
      WBVar01318698
      WBVar00312859
      WBVar01318699
      WBVar01944105
      WBVar00312860
      WBVar01318700
      WBVar00312861
      WBVar00312862
      WBVar01318702
      WBVar01318704
      WBVar00601130
      WBVar01937125
      WBVar02067355
      WBVar00239012
      WBVar00239013
      WBVar00239014
      WBVar00318100
      WBVar00106810
      WBVar01540059
      WBVar01540060
      WBVar01562711
      WBVar00106811
      WBVar01826821
      WBVar00106813
      WBVar01562712
      WBVar00106817
      WBVar00106818
      WBVar00106819
      WBVar02112434
      WBVar01392033
      WBVar02122928
      WBVar01895624
      WBVar01895625
      WBVar02123669
      WBVar01895626
      WBVar01264883
      WBVar01895627
      WBVar01895628
      WBVar01895629
      WBVar01392045
      WBVar01895630
      WBVar01994446
      WBVar00321796
      WBVar01264894
      WBVar01961027
      WBVar02106565
      WBVar02106566
      WBVar01264905
      WBVar00011888
      WBVar01478509
      WBVar01478510
      WBVar02121860
      WBVar00011893
      WBVar02068342
      WBVar02068343
      WBVar00011898
      WBVar01498941
      WBVar02111559
      WBVar00011903
      WBVar02150852
      WBVar00011908
      WBVar02109909
      WBVar00011913
      WBVar01251959
      WBVar01499318
      WBVar00785667
      WBVar02122794
      WBVar01251960
      WBVar00785668
      WBVar00011918
      WBVar01251961
      WBVar00785669
      WBVar01251966
      WBVar00785670
      WBVar01251972
      WBVar00785671
      WBVar00011923
      WBVar00785672
      WBVar01441975
      WBVar01251975
      WBVar00785673
      WBVar01251977
      WBVar00785674
      WBVar01441977
      WBVar00011928
      WBVar01251979
      WBVar00785675
      WBVar01441979
      WBVar01400859
      WBVar01251980
      WBVar00785676
      WBVar01400860
      WBVar02131106
      WBVar00785677
      WBVar01251981
      WBVar00011933
      WBVar02131107
      WBVar00785678
      WBVar01406817
      WBVar00785679
      WBVar01406818
    Strain: WBStrain00037751
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (29)
    Paralog: WBGene00000221 Caenorhabditis elegans From_analysis: Panther
      WBGene00007932 Caenorhabditis elegans From_analysis: Panther
      WBGene00077761 Caenorhabditis elegans From_analysis: Panther
      WBGene00013878 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: zip-3 encodes a bZip transcription factor. Paper_evidence: WBPaper00027309
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Feb 2008 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in mitochondrial unfolded protein response and negative regulation of innate immune response. Located in nucleus. Is an ortholog of human ATF5 (activating transcription factor 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W07G1.3
    Corresponding_CDS_history: W07G1.3:wp128
    Corresponding_transcript: W07G1.3.1
      W07G1.3.2
    Other_sequence: Tcir_isotig12628
      Dviv_isotig28954
      Oden_isotig19788
    Associated_feature: WBsf666346
      WBsf666347
      WBsf666348
      WBsf666349
      WBsf978537
      WBsf981349
      WBsf990563
      WBsf990564
      WBsf1013732
      WBsf224224
    Transcription_factor: WBTranscriptionFactor000224
  Experimental_info: RNAi_result: WBRNAi00054956 Inferred_automatically: RNAi_primary
      WBRNAi00054957 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14313
      Expr1012953
      Expr1035455
      Expr1158490
      Expr2018157
      Expr2036294
    Drives_construct: WBCnstr00029995
      WBCnstr00040809
    Construct_product: WBCnstr00017357
      WBCnstr00029995
      WBCnstr00040809
    Regulate_expr_cluster: WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
    Microarray_results (28)
    Expression_cluster (136)
    Interaction (14)
  Map_info: Map: II Position: 21.5462 Error: 0.035138
    Positive: Positive_clone: W07G1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00055090
    WBPaper00056326
    WBPaper00061738
    WBPaper00062345
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene