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WormBase Tree Display for Gene: WBGene00011299

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Name Class

WBGene00011299SMapS_parentSequenceR107
IdentityVersion2
NameCGC_nameikke-1Person_evidenceWBPerson3983
WBPerson295
Sequence_nameR107.4
Molecular_name (13)
Other_nameCELE_R107.4Accession_evidenceNDBBX284603
Public_nameikke-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
216 Feb 2007 14:39:36WBPerson2970Name_changeCGC_nameikke-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classikke
Allele (60)
StrainWBStrain00037610
RNASeq_FPKM (74)
GO_annotation (19)
Contained_in_operonCEOP3568
Ortholog (24)
ParalogWBGene00012726Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein serine/threonine kinase activity. Involved in regulation of autophagy. Located in cytoplasm. Expressed in intestinal muscle.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR107.4a
R107.4b
R107.4c
R107.4d
Corresponding_CDS_historyR107.4:wp59
R107.4:wp85
Corresponding_transcriptR107.4a.1
R107.4a.2
R107.4b.1
R107.4c.1
R107.4d.1
Other_sequenceCJC04795_1
Dviv_isotig29454
CJC08124_1
Associated_featureWBsf667220
WBsf227229
WBsf227230
WBsf227231
Experimental_infoRNAi_resultWBRNAi00017684Inferred_automaticallyRNAi_primary
WBRNAi00024087Inferred_automaticallyRNAi_primary
WBRNAi00005028Inferred_automaticallyRNAi_primary
WBRNAi00023556Inferred_automaticallyRNAi_primary
WBRNAi00023289Inferred_automaticallyRNAi_primary
WBRNAi00008232Inferred_automaticallyRNAi_primary
WBRNAi00082540Inferred_automaticallyRNAi_primary
WBRNAi00113649Inferred_automaticallyRNAi_primary
WBRNAi00002155Inferred_automaticallyRNAi_primary
WBRNAi00051669Inferred_automaticallyRNAi_primary
Expr_patternExpr39
Expr14449
Expr14452
Expr1012174
Expr1034966
Expr1155343
Expr2012715
Expr2030951
Drives_constructWBCnstr00030764
Construct_productWBCnstr00030764
WBCnstr00039376
AntibodyWBAntibody00002800
Microarray_results (38)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032031:DConiospora_upregulated_cDNA_12h
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_embryo_enriched
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045316:prg-1_upregulated_L2
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Oogenic
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049217:DAF-16_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053599:female_vs_male_upregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056284:ints-1(RNAi)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059174:MEG-3_interacting
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059471:EGL-43_interacting
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:PLM
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:lst-4_22151-F46F11.6_12556
WBPaper00061651:PVN_enriched
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_4
WBPaper00025032:cluster_4
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032948:StarveUp2
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035905:FBF-1_Associated
WBPaper00037611:RNP-8-associated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040823:alg-1(gk214)_downregulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042258:DA1877_downregulated_GravidAdult
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:Cluster_E
[cgc6390]:mixed_oogenesis-somatic
Interaction (66)
Map_infoMapIIIPosition0.11478Error0.003393
PositivePositive_cloneR107Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00003798
WBPaper00027258
WBPaper00031148
WBPaper00038491
WBPaper00053507
WBPaper00055090
WBPaper00061547
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene