WormBase Tree Display for Gene: WBGene00009826

WBGene00009826 SMap: S_parent: Sequence: F47G4
  Identity: Version: 1
    Name: Sequence_name: F47G4.5
      Molecular_name: F47G4.5
        F47G4.5.1
        CE18703
      Other_name: CELE_F47G4.5 Accession_evidence: NDB BX284601
      Public_name: F47G4.5
    DB_info: Database: AceView gene 1O654
        WormQTL gene WBGene00009826
        WormFlux gene WBGene00009826
        NDB locus_tag CELE_F47G4.5
        Panther gene CAEEL|WormBase=WBGene00009826|UniProtKB=Q9XTS3
          family PTHR19845
        NCBI gene 173270
        RefSeq protein NM_061051.5
        TREEFAM TREEFAM_ID TF343524
        TrEMBL UniProtAcc Q9XTS3
        UniProt_GCRP UniProtAcc Q9XTS3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (37)
    Strain: WBStrain00032698
    RNASeq_FPKM (74)
    GO_annotation: 00101084
      00101085
      00101086
      00101087
      00101088
      00101089
      00101090
    Ortholog (20)
    Paralog: WBGene00003184 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009825 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: F47G4.5 encodes a paralog of MEI-2 that, like MEI-2, binds MEI-1 in vitro; F47G4.5 might thus be an alternative ligand of MEI-1 in vivo. Paper_evidence: WBPaper00004129
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Contributes to microtubule severing ATPase activity. Involved in microtubule depolymerization. Part of katanin complex. Expressed in amphid neurons; inner labial neurons; outer labial neurons; and phasmid neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47G4.5
    Corresponding_transcript: F47G4.5.1
    Associated_feature: WBsf649733
      WBsf986022
      WBsf220567
  Experimental_info: RNAi_result: WBRNAi00003700 Inferred_automatically: RNAi_primary
      WBRNAi00032452 Inferred_automatically: RNAi_primary
      WBRNAi00115723 Inferred_automatically: RNAi_primary
      WBRNAi00098000 Inferred_automatically: RNAi_primary
      WBRNAi00047683 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12682
      Expr12683
      Expr1019835
      Expr1151524
      Expr2003865
      Expr2022088
    Drives_construct: WBCnstr00022602
      WBCnstr00022603
      WBCnstr00031889
    Construct_product: WBCnstr00022603
      WBCnstr00031889
    Microarray_results (16)
    Expression_cluster: WBPaper00037682:sma-2_upregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_embryo_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:ADE
      WBPaper00061340:ADF
      WBPaper00061340:ADL
      WBPaper00061340:ASE
      WBPaper00061340:ASG
      WBPaper00061340:ASH
      WBPaper00061340:ASI
      WBPaper00061340:ASJ
      WBPaper00061340:ASK
      WBPaper00061340:AWA
      WBPaper00061340:AWC
      WBPaper00061340:BAG
      WBPaper00061340:CEP
      WBPaper00061340:IL1
      WBPaper00061340:URX
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:rab-28-jbts-14_9542
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065158:25C_vs_15C_downregulated_AFD
      WBPaper00065158:AFD_enriched
      WBPaper00065841:35_4
      WBPaper00065841:36_0
      WBPaper00065841:36_2
      WBPaper00065841:36_3
      WBPaper00065841:39_0
      WBPaper00065841:39_1
      WBPaper00065841:47_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      cgc4489_group_17
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00036130:mir-243_up_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00039866:SAM_daf-19_downregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00042548:miRISC_enriched
      WBPaper00045294:0.1uM_TBBP_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      [cgc5376]:let-60(G12V)-regulated_genes
    Interaction (13)
  Map_info: Positive: Positive_clone: F47G4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 22.9922
  Reference: WBPaper00004129
  Method: Gene