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WormBase Tree Display for Gene: WBGene00009823

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Name Class

WBGene00009823SMapS_parentSequenceF47G4
IdentityVersion2
NameCGC_namegadr-6Person_evidenceWBPerson206
Sequence_nameF47G4.2
Molecular_nameF47G4.2
F47G4.2.1
CE19875
F47G4.2.2
Other_nameCELE_F47G4.2Accession_evidenceNDBBX284601
Public_namegadr-6
DB_infoDatabaseAceViewgene1O670
WormQTLgeneWBGene00009823
WormFluxgeneWBGene00009823
NDBlocus_tagCELE_F47G4.2
PanthergeneCAEEL|WormBase=WBGene00009823|UniProtKB=Q9XTS0
familyPTHR12904
NCBIgene173273
RefSeqproteinNM_061054.9
TREEFAMTREEFAM_IDTF322626
TrEMBLUniProtAccQ9XTS0
UniProt_GCRPUniProtAccQ9XTS0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
212 Oct 2010 11:39:13WBPerson2970Name_changeCGC_namegadr-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgadr
Allele (70)
StrainWBStrain00033268
RNASeq_FPKM (74)
GO_annotation00101075
Ortholog (23)
Paralog (32)
Structured_descriptionAutomated_descriptionPredicted to be part of Cul2-RING ubiquitin ligase complex.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF47G4.2
Corresponding_transcriptF47G4.2.1
F47G4.2.2
Associated_featureWBsf649735
WBsf665094
WBsf986038
WBsf1011176
WBsf220569
Experimental_infoRNAi_resultWBRNAi00003698Inferred_automaticallyRNAi_primary
WBRNAi00047680Inferred_automaticallyRNAi_primary
WBRNAi00032449Inferred_automaticallyRNAi_primary
WBRNAi00073102Inferred_automaticallyRNAi_primary
WBRNAi00001640Inferred_automaticallyRNAi_primary
WBRNAi00022574Inferred_automaticallyRNAi_primary
Expr_pattern (5)
Drives_constructWBCnstr00031891
Construct_productWBCnstr00031891
Microarray_results (16)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_embryo_enriched
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045521:Oogenic
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00048952:glucose_repressed
WBPaper00048988:neuron_expressed
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050496:unc-39(hp701)_regulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:SGP_biased
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061340:Intestinal_and_rectal_muscle
WBPaper00061340:Neuroblast_AFD_RMD
WBPaper00061340:Parents_of_U_F_B_DVA
WBPaper00061340:Parent_of_AMsh_URB
WBPaper00061340:RME_LR_parent
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:nrde-3-tra-4_10484
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00062103:neuron_enriched
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064992:Capsaicin_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065258:anchor-cell_enriched
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4386_cluster_6_1
cgc4489_group_4
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_D
WBPaper00036286:Pattern_F
WBPaper00037611:GLD-2-associated
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042548:miRISC_enriched
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045263:ProLongevity-mtROS_upregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:mixed_oogenesis-somatic
Interaction (15)
Map_infoMapIPosition23.039Error0.0094
PositivePositive_cloneF47G4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038341
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene