WormBase Tree Display for Gene: WBGene00009560
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| WBGene00009560 | SMap | S_parent | Sequence | F39D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | psa-3 | Person_evidence | WBPerson3204 | |||||
| Sequence_name | F39D8.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F39D8.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | psa-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00009560 | |||||
| WormFlux | gene | WBGene00009560 | |||||||
| NDB | locus_tag | CELE_F39D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009560|UniProtKB=Q0G825 | |||||||
| family | PTHR11850 | ||||||||
| NCBI | gene | 181631 | |||||||
| RefSeq | protein | NM_001313418.3 | |||||||
| NM_001270334.3 | |||||||||
| NM_001083296.5 | |||||||||
| NM_001083297.5 | |||||||||
| SwissProt | UniProtAcc | Q0G825 | |||||||
| UniProt_GCRP | UniProtAcc | Q0G825 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Jul 2005 13:25:29 | WBPerson2970 | Name_change | CGC_name | psa-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | psa | ||||||||
| Allele (210) | |||||||||
| Strain | WBStrain00008466 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00055778 | ||||||||
| 00055779 | |||||||||
| 00055780 | |||||||||
| 00055781 | |||||||||
| 00055782 | |||||||||
| 00055783 | |||||||||
| Ortholog (21) | |||||||||
| Structured_description | Concise_description | psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. | Paper_evidence | WBPaper00027741 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Feb 2014 00:00:00 | ||||||||
| Automated_description | Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39D8.2a | |||||||
| F39D8.2b | |||||||||
| F39D8.2c | |||||||||
| F39D8.2d | |||||||||
| Corresponding_CDS_history | F39D8.2:wp102 | ||||||||
| F39D8.2:wp163 | |||||||||
| F39D8.2a:wp246 | |||||||||
| Corresponding_transcript | F39D8.2a.1 | ||||||||
| F39D8.2b.1 | |||||||||
| F39D8.2c.1 | |||||||||
| F39D8.2d.1 | |||||||||
| Other_sequence | Tcol_isotig16426 | ||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00083965 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046770 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014598 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031986 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024023 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023460 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4287 | ||||||||
| Expr9858 | |||||||||
| Expr1017410 | |||||||||
| Expr1034181 | |||||||||
| Expr1150644 | |||||||||
| Expr2015130 | |||||||||
| Expr2033368 | |||||||||
| Drives_construct | WBCnstr00009746 | ||||||||
| WBCnstr00032104 | |||||||||
| Construct_product | WBCnstr00009746 | ||||||||
| WBCnstr00032104 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (11) | |||||||||
| WBProcess | WBbiopr:00000073 | ||||||||
| Map_info | Map | X | Position | 22.5924 | Error | 0.030916 | |||
| Positive | Positive_clone | F39D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5395 | |||||||
| 5655 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010125 | ||||||||
| WBPaper00010126 | |||||||||
| WBPaper00011974 | |||||||||
| WBPaper00027741 | |||||||||
| WBPaper00030889 | |||||||||
| WBPaper00044833 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
