| WBGene00009560 | SMap | S_parent | Sequence | F39D8 |
|---|
| Identity | Version | 2 |
| | Name | CGC_name | psa-3 | Person_evidence | WBPerson3204 |
| | | Sequence_name | F39D8.2 |
| | | Molecular_name (12) |
| | | Other_name | CELE_F39D8.2 | Accession_evidence | NDB | BX284606 |
| | | Public_name | psa-3 |
| | DB_info | Database | WormQTL | gene | WBGene00009560 |
| | | | WormFlux | gene | WBGene00009560 |
| | | | NDB | locus_tag | CELE_F39D8.2 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00009560|UniProtKB=Q0G825 |
| | | | | family | PTHR11850 |
| | | | NCBI | gene | 181631 |
| | | | RefSeq | protein | NM_001313418.3 |
| | | | | | NM_001270334.3 |
| | | | | | NM_001083296.5 |
| | | | | | NM_001083297.5 |
| | | | SwissProt | UniProtAcc | Q0G825 |
| | | | UniProt_GCRP | UniProtAcc | Q0G825 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 |
| | | | 2 | 13 Jul 2005 13:25:29 | WBPerson2970 | Name_change | CGC_name | psa-3 |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | psa |
| | Allele (210) |
| | Strain | WBStrain00008466 |
| | RNASeq_FPKM (74) |
| | GO_annotation | 00055778 |
| | | 00055779 |
| | | 00055780 |
| | | 00055781 |
| | | 00055782 |
| | | 00055783 |
| | Ortholog (21) |
| | Structured_description | Concise_description | psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. | Paper_evidence | WBPaper00027741 |
| | | | | Curator_confirmed | WBPerson1843 |
| | | | | Date_last_updated | 15 Feb 2014 00:00:00 |
| | | Automated_description | Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | F39D8.2a |
| | | F39D8.2b |
| | | F39D8.2c |
| | | F39D8.2d |
| | Corresponding_CDS_history | F39D8.2:wp102 |
| | | F39D8.2:wp163 |
| | | F39D8.2a:wp246 |
| | Corresponding_transcript | F39D8.2a.1 |
| | | F39D8.2b.1 |
| | | F39D8.2c.1 |
| | | F39D8.2d.1 |
| | Other_sequence | Tcol_isotig16426 |
| | Associated_feature (13) |
| Experimental_info | RNAi_result | WBRNAi00083965 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00046770 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00023225 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00023737 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00014598 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00031986 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00024023 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00023460 | Inferred_automatically | RNAi_primary |
| | Expr_pattern | Expr4287 |
| | | Expr9858 |
| | | Expr1017410 |
| | | Expr1034181 |
| | | Expr1150644 |
| | | Expr2015130 |
| | | Expr2033368 |
| | Drives_construct | WBCnstr00009746 |
| | | WBCnstr00032104 |
| | Construct_product | WBCnstr00009746 |
| | | WBCnstr00032104 |
| | Microarray_results (26) |
| | Expression_cluster | WBPaper00032976:non_compensated_genes |
| | | WBPaper00037950:A-class-motor-neurons_L1-larva_expressed |
| | | WBPaper00037950:BAG-neuron_blastula-embryo_expressed |
| | | WBPaper00037950:coelomocytes_L2-larva_expressed |
| | | WBPaper00037950:dopaminergic-neurons_L1-larva_expressed |
| | | WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed |
| | | WBPaper00037950:germline-precursors_blastula-embryo_expressed |
| | | WBPaper00037950:intestine_embryo_enriched |
| | | WBPaper00037950:intestine_embryo_SelectivelyEnriched |
| | | WBPaper00037950:intestine_L1-larva_expressed |
| | | WBPaper00037950:intestine_L2-larva_expressed |
| | | WBPaper00037950:pharyngeal-muscle_embryo_enriched |
| | | WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched |
| | | WBPaper00037950:pharyngeal-muscle_L1-larva_expressed |
| | | WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed |
| | | WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq |
| | | WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq |
| | | WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq |
| | | WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq |
| | | WBPaper00044736:flat_dev_expression |
| | | WBPaper00044786:emr-1(gk119)_upregulated |
| | | WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated |
| | | WBPaper00046121:endoderm_unique |
| | | WBPaper00048971:daf-16(mgDf50)_upregulated_L1 |
| | | WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated |
| | | WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr) |
| | | WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050990:intestine_enriched |
| | | WBPaper00050990:intestine_expressed |
| | | WBPaper00052884:emb-4(hc60)_upregulated |
| | | WBPaper00053184:sma-2(rax5)_upregulated |
| | | WBPaper00053184:sma-4(rax3)_upregulated |
| | | WBPaper00053302:alovudine_24h_regulated |
| | | WBPaper00053302:stavudine_24h_regulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053388:dauer_regulated_Cluster3 |
| | | WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated |
| | | WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated |
| | | WBPaper00053810:nuo-6(qm200)_upregulated |
| | | WBPaper00053810:sod-2(ok1030)_upregulated |
| | | WBPaper00055060:flr-1(RNAi)_upregulated |
| | | WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated |
| | | WBPaper00055354:Rifampicin-Psora_downregulated |
| | | WBPaper00055386:daf-2(e1370)_downregulated |
| | | WBPaper00055941:atfs-1(et15)_upregulated |
| | | WBPaper00055971:nhl-2(ok818)_25C_downregulated |
| | | WBPaper00056275:P.aeruginosa_upregulated |
| | | WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent |
| | | WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent |
| | | WBPaper00056290:hsp-6(mg585)_upregulated |
| | | WBPaper00056446:hsb-1(cg116)_upregulated |
| | | WBPaper00058598:sin-3(tm1276)_downregulated |
| | | WBPaper00058691:cfp-1(tm6369)_downregulated |
| | | WBPaper00058691:sin-3(tm1276)_downregulated |
| | | WBPaper00058948:PA14_downregulated |
| | | WBPaper00059117:B.subtilis_upregulated |
| | | WBPaper00059664:srbc-48(ac23)_upregulated |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_N2 |
| | | WBPaper00060661:sensory-neuron_depleted |
| | | WBPaper00060909:atfs-1(cmh15)_downregulated |
| | | WBPaper00061007:HB101_upregulated |
| | | WBPaper00061007:S.aquatilis_upregulated |
| | | WBPaper00061203:sin-3(tm1276)_upregulated |
| | | WBPaper00061340:BWM_far_posterior |
| | | WBPaper00061340:DVA |
| | | WBPaper00061340:F_U |
| | | WBPaper00061340:Intestinal_and_rectal_muscle |
| | | WBPaper00061340:Intestine |
| | | WBPaper00061340:K_Kprime |
| | | WBPaper00061340:T |
| | | WBPaper00061340:Tail_hypodermis |
| | | WBPaper00061341:28C_24h_upregulated |
| | | WBPaper00061341:28C_48h_upregulated |
| | | WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection |
| | | WBPaper00061527:sol-1-jnk-1_18695 |
| | | WBPaper00061753:csr-1(tor159)_upregulated_25C |
| | | WBPaper00062193:skn-1(RNAi)_upregulated |
| | | WBPaper00062325:muscle_depleted_coding-RNA |
| | | WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA |
| | | WBPaper00064005:starvation_upregulated_N2_mRNA |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064933:bcf-1(ylf1)_downregulated_transcript |
| | | WBPaper00065086:JU1400_N.ferruginous_regulated |
| | | WBPaper00065096:25C_vs_20C_downregulated |
| | | WBPaper00065096:Day10_vs_Day1_downregulated |
| | | WBPaper00065746:eat-2(ad1113)_downregulated |
| | | WBPaper00065841:26_2 |
| | | WBPaper00066232:hsf-1(RNAi)_upregulated_WT |
| | | WBPaper00025032:cluster_5 |
| | | WBPaper00035873:dpy-10_regulated |
| | | WBPaper00036286:Pattern_G |
| | | WBPaper00037695:WC_5-day |
| | | WBPaper00040858:eQTL_age_regulated_developing |
| | | WBPaper00040858:eQTL_regulated_developing |
| | | WBPaper00040858:eQTL_regulated_juvenile |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041960:N2_fasting_upregulated_anytime |
| | | WBPaper00047070:N2_UV_downregulated |
| | | WBPaper00057098:SiO2-nanoparticles_upregulated |
| | | [cgc5767]:expression_class_E |
| | | [cgc5767]:expression_class_E_pi(83_min) |
| | | [cgc5767]:expression_class_SE |
| | | [cgc5767]:expression_class_SE_pi(83_min) |
| | Interaction (11) |
| | WBProcess | WBbiopr:00000073 |
| Map_info | Map | X | Position | 22.5924 | Error | 0.030916 |
| | Positive | Positive_clone | F39D8 | Inferred_automatically | From sequence, transcript, pseudogene data |
| | Mapping_data | Multi_point | 5395 |
| | | | 5655 |
| | Pseudo_map_position |
| Reference | WBPaper00010125 |
| | WBPaper00010126 |
| | WBPaper00011974 |
| | WBPaper00027741 |
| | WBPaper00030889 |
| | WBPaper00044833 |
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |
