WormBase Tree Display for Gene: WBGene00009560
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WBGene00009560 | SMap | S_parent | Sequence | F39D8 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | psa | ||||||
Allele (210) | |||||||
Strain | WBStrain00008466 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00055778 | ||||||
00055779 | |||||||
00055780 | |||||||
00055781 | |||||||
00055782 | |||||||
00055783 | |||||||
Ortholog (21) | |||||||
Structured_description | Concise_description | psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. | Paper_evidence | WBPaper00027741 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 15 Feb 2014 00:00:00 | ||||||
Automated_description | Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F39D8.2a | |||||
F39D8.2b | |||||||
F39D8.2c | |||||||
F39D8.2d | |||||||
Corresponding_CDS_history | F39D8.2:wp102 | ||||||
F39D8.2:wp163 | |||||||
F39D8.2a:wp246 | |||||||
Corresponding_transcript | F39D8.2a.1 | ||||||
F39D8.2b.1 | |||||||
F39D8.2c.1 | |||||||
F39D8.2d.1 | |||||||
Other_sequence | Tcol_isotig16426 | ||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result | WBRNAi00083965 | Inferred_automatically | RNAi_primary | |||
WBRNAi00046770 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023225 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023737 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014598 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031986 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024023 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023460 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr4287 | ||||||
Expr9858 | |||||||
Expr1017410 | |||||||
Expr1034181 | |||||||
Expr1150644 | |||||||
Expr2015130 | |||||||
Expr2033368 | |||||||
Drives_construct | WBCnstr00009746 | ||||||
WBCnstr00032104 | |||||||
Construct_product | WBCnstr00009746 | ||||||
WBCnstr00032104 | |||||||
Microarray_results (26) | |||||||
Expression_cluster (112) | |||||||
Interaction (11) | |||||||
WBProcess | WBbiopr:00000073 | ||||||
Map_info | Map | X | Position | 22.5924 | Error | 0.030916 | |
Positive | Positive_clone | F39D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5395 | |||||
5655 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00010125 | ||||||
WBPaper00010126 | |||||||
WBPaper00011974 | |||||||
WBPaper00027741 | |||||||
WBPaper00030889 | |||||||
WBPaper00044833 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |